View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1853_high_10 (Length: 238)
Name: NF1853_high_10
Description: NF1853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1853_high_10 |
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| [»] scaffold0559 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 40782809 - 40782713
Alignment:
| Q |
1 |
cctaacacacttccacgacacatgatttgtgttggcccatttgcttcctttggcgctgaaaaattaaaaggaggttaaagaaagaaaggaagaagat |
97 |
Q |
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| T |
40782809 |
cctaacacacttccacgacacatgatttgtgttggcccatttgcttcctttggcgctgaaaaattaaaaggatgttaaagaaagaaaggaagaagat |
40782713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 40782645 - 40782589
Alignment:
| Q |
165 |
taaagggttctcatgtgctatacaatcaagggcttagatctctcacgtgatgaaaga |
221 |
Q |
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| T |
40782645 |
taaagggttctcatgtgctatacaatcaagggcttagatctctcacgtgatgaaaga |
40782589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 10871 - 10773
Alignment:
| Q |
1 |
cctaacacacttccacgacacatgattt-gtgttggcccatttgcttcctttggcgctgaaaaa--ttaaaaggaggttaaagaaagaaaggaagaaga |
96 |
Q |
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| T |
10871 |
cctaacacacttccacgacacatgattttgtgttggcccatttgcttcctttggcgctgaaaaaattaaaaaggatgttaaagaaagaaaggaagaaga |
10773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 10693 - 10638
Alignment:
| Q |
166 |
aaagggttctcatgtgctatacaatcaagggcttagatctctcacgtgatgaaaga |
221 |
Q |
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| T |
10693 |
aaagggttctcatgtgctatacaatcaagggcttagatctctcacgtgatgaaaga |
10638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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