View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1853_high_11 (Length: 237)
Name: NF1853_high_11
Description: NF1853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1853_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4139153 - 4139372
Alignment:
| Q |
1 |
gccaagattattggaaagtcaacaagaactagattgcaaatatggtttggtttgatcaaggactgatacattgcaataatgcactcaatttataatcaat |
100 |
Q |
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| T |
4139153 |
gccaagattattggaaagtcaacaagaactagattgcaaatatggtttggtttgatcaaggactgatacattgcaataatgcactcaatttataatcaat |
4139252 |
T |
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| Q |
101 |
catataggcaaatgcataaactattagaatatatttttatcaatgacttgacttgacttgcatgcataattcttgtaatgtaacatggatatctctataa |
200 |
Q |
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| T |
4139253 |
catataggcaaatgcataaactattagaatatatttttatcaatgacttgacttgact----tgcataattcttgtaatgtaacatggatatctctataa |
4139348 |
T |
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| Q |
201 |
tattcaacaattaaaagatagtta |
224 |
Q |
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| T |
4139349 |
tattcaacaagtaaaaaatagtta |
4139372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 4130535 - 4130580
Alignment:
| Q |
88 |
atttataatcaatcatataggcaaatgcataaactattagaatata |
133 |
Q |
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| T |
4130535 |
atttataatgaatcgtataggcaaatgcataaactatttgaatata |
4130580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 4143755 - 4143842
Alignment:
| Q |
2 |
ccaagattattggaaagtcaacaagaactagattgcaaatatggtttggtttgatcaaggactgatacattgcaataatgcactcaatt |
90 |
Q |
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| T |
4143755 |
ccaagatgattggaatgccaacaagaaccaaattgcaaatatgatttgttttgaccaaggattaatata-tgtaataatgcactcaatt |
4143842 |
T |
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