View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1853_high_7 (Length: 291)
Name: NF1853_high_7
Description: NF1853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1853_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 4139585 - 4139715
Alignment:
| Q |
86 |
ttgaaagtcttgttcgttttcttaacatttatcttttggttgtttcctggaacttgcaaacacgagcagggtgttttggatccacatgagaaaagattgc |
185 |
Q |
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| T |
4139585 |
ttgaaagtcttggtcgttttcttaacatttatcttttggttgtttcctggaacttgcaaacacgagcagggtgttttggatccacatgagaaaagattgc |
4139684 |
T |
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| Q |
186 |
aaaaaataatcaaataaaaacgactattttt |
216 |
Q |
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| T |
4139685 |
aaaaaataatcaaataaaaacgactattttt |
4139715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 4139472 - 4139561
Alignment:
| Q |
1 |
ctagacaaataatttatttttgatttcattccaaagtcttatagttttccaatttcaatatttaaatattaatagtgaaagaaaattgaa |
90 |
Q |
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| T |
4139472 |
ctagacaaataatttattgttgatttcatcacaaaggcttatagttttccaatttcaatatttaaatattaatagtgaaagaaaattgaa |
4139561 |
T |
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