View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1853_low_10 (Length: 303)
Name: NF1853_low_10
Description: NF1853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1853_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 7035871 - 7036096
Alignment:
| Q |
16 |
atacaaatctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaaccaact |
115 |
Q |
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| T |
7035871 |
atacagatctttcccatgaaagacacttaaaataatacagttccctccagatgaaataatatgtgacactacagcccattttaatgtatataaaccaact |
7035970 |
T |
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| Q |
116 |
ggtgagcaaatcacctaaagccannnnnnnnnnnnnnagaattgtc-atgtatcatccagaaaatctcacttgaacaccata-----ttattttatttta |
209 |
Q |
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| T |
7035971 |
ggtgagcaaatcacctaaagccatttttttctttttcagaattgtcaatgtatcatccagaaaatctcacttgaacaccatattattttattttatttta |
7036070 |
T |
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| Q |
210 |
ttttgggtgtggagttggttgggttg |
235 |
Q |
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|||||||||||||||||||||||||| |
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| T |
7036071 |
ttttgggtgtggagttggttgggttg |
7036096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 7897111 - 7897326
Alignment:
| Q |
16 |
atacaaatctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaaccaact |
115 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7897111 |
atacacatctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaaccaact |
7897210 |
T |
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| Q |
116 |
ggtgagcaaatcacctaaagccannnnnnnnnnnnnnagaattgtc-atgtatcatccagaaaatctcacttgaacaccatattattttattttattttg |
214 |
Q |
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| T |
7897211 |
ggtgagcaaatcacctaaagccatttttttcttttttagaattgtcaatgtatcatccagaaaatctcactcgaacaccata-----ttattttattttg |
7897305 |
T |
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| Q |
215 |
ggtgtggagttggttgggttg |
235 |
Q |
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| T |
7897306 |
ggtgtggagttggttgggttg |
7897326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 29380357 - 29380425
Alignment:
| Q |
65 |
gatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgagcaaatcacctaa |
133 |
Q |
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|||||||||||||| ||||||||| | || |||||||| |||||||||||||| |||||| ||||||| |
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| T |
29380357 |
gatgaaataatatgttacactacagtctatcttaatgtacataaaccaactggttagcaaaccacctaa |
29380425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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