View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1853_low_13 (Length: 272)
Name: NF1853_low_13
Description: NF1853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1853_low_13 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 44566501 - 44566244
Alignment:
| Q |
15 |
caaaggcacctgtaaattaggtaaagaaaataatatcacttaacaaaaatcattttttacaccacagaaatttattttctcttctgaagagcaactcaga |
114 |
Q |
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| T |
44566501 |
caaaggcacctgtaaattaggtaaagaaaataatatcacttaacaaaaatcattttttacaccacagaaatttattttctcttctgaagagcaactcaga |
44566402 |
T |
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| Q |
115 |
agaataatgtggcattagacttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactgccaaaagcaatatataataaaa |
214 |
Q |
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| T |
44566401 |
agaataatgtggcattagacttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactgcaaaaagcaatatataataaaa |
44566302 |
T |
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| Q |
215 |
tatatcagcacactgcaacgattaataccatagacaaagtaggaatctgaattcaaca |
272 |
Q |
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| T |
44566301 |
tatatcagcacactgcaacgattaataccatagacaaagtaggaatctgaattcaaca |
44566244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 36032681 - 36032874
Alignment:
| Q |
15 |
caaaggcacctgtaaattaggtaaagaaaata----atatcacttaacaaaaatcattttttacaccacagaaatttattttctcttctgaagagcaact |
110 |
Q |
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| T |
36032681 |
caaaggaacctgcaaattaggtaaaaaaaatatataacatcacttaacagaaatcatttgttacacagcagaaatttattttcactgctatagagtaact |
36032780 |
T |
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| Q |
111 |
cagaagaataatgtggcattagacttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactgccaaaagcaata |
204 |
Q |
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| T |
36032781 |
cggaaggatattatggcattgcacttactgcatatattagaaatatgcggtgtccaagaacagatatcttacgaagatactgcagaaagcaata |
36032874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 20122217 - 20122158
Alignment:
| Q |
133 |
acttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactg |
192 |
Q |
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| T |
20122217 |
acttactgcgtagattagaaatatgcgatgtccaagaacagatatcttacgaagatactg |
20122158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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