View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1853_low_14 (Length: 270)
Name: NF1853_low_14
Description: NF1853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1853_low_14 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 57 - 270
Target Start/End: Complemental strand, 47731415 - 47731201
Alignment:
| Q |
57 |
aattgttgctgcaaaaaggaaatagtaaggccccatcaccctcttcttgatccaatttatagcgtcgtcgttagagaaaaaatcagattgattaaatcct |
156 |
Q |
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| T |
47731415 |
aattgttgctgcaaaaaggaaatagtaaggccccatcaccctgttcttgatccaatttatagtgtcgtcgttagagaaaaaatcagattgattaaatcct |
47731316 |
T |
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| Q |
157 |
gcttgctgctacaagtgcttagaatgggttcaatcacacacacaaaatgaagaaaagtctcatcatatgcagaatgagctacatttctatgaatgggtca |
256 |
Q |
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| T |
47731315 |
gcttgctgccacaagtgcttagaatgggttcaatcacacacacacaatgaagaaaagtctcatcatatgcagaatgggctacatttctatgaacgggtca |
47731216 |
T |
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| Q |
257 |
-gttcttcctctttc |
270 |
Q |
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|||||||||||||| |
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| T |
47731215 |
ggttcttcctctttc |
47731201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 50823362 - 50823520
Alignment:
| Q |
61 |
gttgctgcaaaaaggaaatagtaaggccccatcaccctcttcttgatccaatttatagcgtcgtcgttagagaaaaaatcagattgattaaatcctgctt |
160 |
Q |
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|||||||||||||||||| |||||| | ||||| | |||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||| |
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| T |
50823362 |
gttgctgcaaaaaggaaagggtaagggtc-atcactccattcttgatccaatttatagcatcctcattagagaaaaaatcagattgattaaaacctgctt |
50823460 |
T |
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| Q |
161 |
gctgctacaagtgcttagaatgggttcaatcacacacacaaaatgaagaaaagtctcatcat |
222 |
Q |
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| T |
50823461 |
gctgccacaagtgcttagaatgggtgcaatcacgcacac--aatgaagaaaagtctcatcat |
50823520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 61 - 213
Target Start/End: Original strand, 26334376 - 26334526
Alignment:
| Q |
61 |
gttgctgcaaaaaggaaatagtaaggccccatcaccctcttcttgatccaatttatagcgtcgtcgttagagaaaaaatcagattgattaaatcctgctt |
160 |
Q |
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| T |
26334376 |
gttgctgcaaaaaggaaagagtgagggcccatcaccctattcttgatccaatttatagcgtcttcattggagaaaaggtcatattgattaaatatggcct |
26334475 |
T |
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| Q |
161 |
gctgctacaagtgcttagaatgggttcaatcacacacacaaaatgaagaaaag |
213 |
Q |
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| T |
26334476 |
actaccacaagtgtttagaatgggtgcaatcacacacataa--tgaagaaaag |
26334526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 47731538 - 47731491
Alignment:
| Q |
12 |
agagatgaaaggataagaagctttgagggtatcaatcataccttgaat |
59 |
Q |
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| T |
47731538 |
agagatgaaaggataagaagctttgagggtatcaaccataccttgaat |
47731491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 222
Target Start/End: Complemental strand, 24873730 - 24873567
Alignment:
| Q |
57 |
aattgttgctgcaaaaaggaaatagtaaggccccatcaccctc-ttcttgatccaatttatagcgtcgtcgttagagaaaaaatcagattgattaaatcc |
155 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||| | | |||| ||||||||||||| || | || ||| ||||||||| |||||||||| | |
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| T |
24873730 |
aattgttgctgcaaaaaggaaagagtaagggcccatcacccccatccttggtccaatttatagcatcttaattggag-aaaaatcagcttgattaaattc |
24873632 |
T |
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| Q |
156 |
tgcttgctgctacaagtgcttagaatgggttcaatcacacacacaaaatgaagaaaagtctcatcat |
222 |
Q |
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| T |
24873631 |
gacatgttgccgcaaatgtttagaatgggtgctatcacgcacgc--aatgaagaaaagtctcatcat |
24873567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 43709260 - 43709297
Alignment:
| Q |
57 |
aattgttgctgcaaaaaggaaatagtaaggccccatca |
94 |
Q |
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| T |
43709260 |
aattgttgctgcaaaaaggaaatagtaagggcccatca |
43709297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 43709139 - 43709184
Alignment:
| Q |
14 |
agatgaaaggataagaagctttgagggtatcaatcataccttgaat |
59 |
Q |
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| T |
43709139 |
agatggaaggataacaagcttagagggtatcaaccataccttgaat |
43709184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 27154968 - 27154928
Alignment:
| Q |
19 |
aaaggataagaagctttgagggtatcaatcataccttgaat |
59 |
Q |
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| T |
27154968 |
aaaggataagaagctttgagggtgtcaaccataccttgaat |
27154928 |
T |
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