View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1853_low_15 (Length: 250)
Name: NF1853_low_15
Description: NF1853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1853_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 47731214 - 47730990
Alignment:
| Q |
8 |
gttcttcctctttctggtcatgcccttgatgttctcttggtttcatagagtcccttactccctgcattgacattcatgatatgttgctgtcggttaaaga |
107 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47731214 |
gttcttcctctttctggtcatgcccttggtgttctcttcgtttcatagagtcccttgctccctgcattgacattcatgatatgttgctgtcagttaaaga |
47731115 |
T |
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| Q |
108 |
tgttttctcttctggcagcccccatgctcacatcctttacactcagcttccctcatttgccatagatctcataaataatatgcaactcaatttcaatgct |
207 |
Q |
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||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47731114 |
tgtattctcttctggcagcccccatgctcacattctttacactcagcttccctcatttgccatagacctcataaataatatgcaactcaatttcaatgct |
47731015 |
T |
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| Q |
208 |
tctgtagaggacgcattcatatgga |
232 |
Q |
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|||| |||| ||||||||||||||| |
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| T |
47731014 |
tctgcagagaacgcattcatatgga |
47730990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 26334871 - 26334743
Alignment:
| Q |
101 |
ttaaagatgttttctcttctggcagcccccatgctcacatcctttacactcagcttccctcatttgccatagatctcataaataatatgcaactcaattt |
200 |
Q |
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|||||||||||||||||| | | ||| |||||| || || ||||||| |||||| || ||||||| |||||| ||||||||||||||||||| || || |
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| T |
26334871 |
ttaaagatgttttctcttttaacggcctccatgcacaaattctttacattcagctaccttcatttgtcatagacctcataaataatatgcaacacaggtt |
26334772 |
T |
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| Q |
201 |
caatgcttctgtagaggacgcattcatat |
229 |
Q |
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| T |
26334771 |
caatgcttctctagaggatgtattcatat |
26334743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 24873130 - 24873327
Alignment:
| Q |
8 |
gttcttcctctttctggtcatgcccttgatgttctcttggtttcatagagtcccttactccctgcattgacattcatgatatgttgctgtcggttaaaga |
107 |
Q |
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||||||||||||| ||||| |||||||| |||||||||||||||||| ||||||| | |||| |||||||||||||||| | |||| |||||||| |
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| T |
24873130 |
gttcttcctctttttggtcttgcccttggagttctcttggtttcatagggtcccttgcaccctacattgacattcatgatttacaattgtcagttaaaga |
24873229 |
T |
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| Q |
108 |
tgttttctcttctggcagcccccatgctcacatcctttacactcagcttccctcatttgccatagatctcataaataatatgcaactcaatttcaatgc |
206 |
Q |
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||| |||||||||| ||||||| |||| ||||||||||||||||| || || || || ||||||| ||||| |||||||||||| ||||||||||||| |
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| T |
24873230 |
tgtattctcttctgccagcccc-atgcacacatcctttacactcaactgccttctttcaccatagacctcatcaataatatgcaattcaatttcaatgc |
24873327 |
T |
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