View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1853_low_16 (Length: 242)

Name: NF1853_low_16
Description: NF1853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1853_low_16
NF1853_low_16
[»] chr7 (23 HSPs)
chr7 (39-240)||(18325993-18326194)
chr7 (47-240)||(16839478-16839674)
chr7 (47-240)||(16846561-16846757)
chr7 (105-240)||(22021230-22021365)
chr7 (114-240)||(22036933-22037059)
chr7 (131-240)||(22019217-22019326)
chr7 (91-154)||(22088417-22088480)
chr7 (91-157)||(20126368-20126434)
chr7 (114-159)||(14076542-14076587)
chr7 (114-159)||(14386570-14386615)
chr7 (118-159)||(22063493-22063534)
chr7 (105-162)||(29881094-29881151)
chr7 (119-161)||(9807676-9807718)
chr7 (91-157)||(22069935-22070001)
chr7 (5-38)||(18323108-18323141)
chr7 (116-213)||(19351193-19351290)
chr7 (113-162)||(29454278-29454327)
chr7 (114-157)||(22080715-22080758)
chr7 (91-157)||(20140998-20141064)
chr7 (91-157)||(20338748-20338814)
chr7 (91-153)||(20374687-20374749)
chr7 (124-161)||(20058233-20058270)
chr7 (105-162)||(29867077-29867134)
[»] chr5 (1 HSPs)
chr5 (91-242)||(3234030-3234181)
[»] chr3 (1 HSPs)
chr3 (112-162)||(3625579-3625629)
[»] chr8 (1 HSPs)
chr8 (114-186)||(27618338-27618410)
[»] chr4 (1 HSPs)
chr4 (117-155)||(11971164-11971202)
[»] chr2 (1 HSPs)
chr2 (112-186)||(20967545-20967619)
[»] chr6 (1 HSPs)
chr6 (108-159)||(6921528-6921579)
[»] chr1 (2 HSPs)
chr1 (122-157)||(15961083-15961118)
chr1 (101-162)||(4366670-4366731)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 39 - 240
Target Start/End: Original strand, 18325993 - 18326194
Alignment:
Q  39 atttgagtggtattgtttattacttggtaattcaaaattacttctattctttttatgattgcaagaatattattgttgagcaatttgtgattatttcact 138  Q
    ||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18325993 atttgagtggtattgtttattacttggtaattcaaaactactcctcttctttttatgattgcaagaatattattgttgagcaatttgcgattatttcact 18326092  T
Q  139 tgatttgggcactgagacatacaaagagttgcttccgcctcgaggttttgcagaagtaccacatgttaagccatctctatgtgtgttgctggattgcctt 238  Q
    |||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18326093 tgatttgggcacggagacatgcaaagatttgcttccgcctcgaggttttgcagaagtaccacatgttaagccatctctatgtgagttgctggattgcctt 18326192  T
Q  239 tg 240  Q
    ||    
T  18326193 tg 18326194  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 240
Target Start/End: Complemental strand, 16839674 - 16839478
Alignment:
Q  47 ggtattgtttattacttggtaattcaaaattacttct---attctttttatgattgcaagaatattattgttgagcaatttgtgattatttcacttgatt 143  Q
    ||||||||| ||||||||| |||||  ||||||| ||   ||||||  |||||||||||| || ||| ||||||||||||||||||||||||||||||||    
T  16839674 ggtattgttaattacttggcaattcgcaattactactctcattcttcgtatgattgcaaggatcttactgttgagcaatttgtgattatttcacttgatt 16839575  T
Q  144 tgggcactgagacatacaaagagttgcttccgcctcgaggttttgcagaagtaccacatgttaagccatctctatgtgtgttgctggattgcctttg 240  Q
    ||||||| |||||||||||| | |||||||| |||||||||||||  ||||| |||  | ||||||||||| | ||| ||||| |||| ||||||||    
T  16839574 tgggcacggagacatacaaatatttgcttccccctcgaggttttgttgaagtgccatttattaagccatctatttgtctgttgatggactgcctttg 16839478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 47 - 240
Target Start/End: Complemental strand, 16846757 - 16846561
Alignment:
Q  47 ggtattgtttattacttggtaattcaaaattacttct---attctttttatgattgcaagaatattattgttgagcaatttgtgattatttcacttgatt 143  Q
    ||||||||| ||||||||| |||||  ||||||| ||   ||||||  |||||||||||| || ||| |||||||||||||||||||||||| |||||||    
T  16846757 ggtattgttaattacttggcaattcgcaattactactctcattcttcgtatgattgcaaggatcttactgttgagcaatttgtgattatttctcttgatt 16846658  T
Q  144 tgggcactgagacatacaaagagttgcttccgcctcgaggttttgcagaagtaccacatgttaagccatctctatgtgtgttgctggattgcctttg 240  Q
    ||||||| |||||||||||| | |||||||| |||||||||||||  ||||| |||  | ||||||||||| | ||| ||||| |||| ||||||||    
T  16846657 tgggcacggagacatacaaatatttgcttccccctcgaggttttgttgaagtgccatttattaagccatctatttgtctgttgatggactgcctttg 16846561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 22021230 - 22021365
Alignment:
Q  105 atattattgttgagcaatttgtgattatttcacttgatttgggcactgagacatacaaagagttgcttccgcctcgaggttttgcagaagtaccacatgt 204  Q
    |||||| | |||||||||||  |||| ||||||||||| | || || ||||||| ||||||||||||||  || ||||||||||  ||||| |||  | |    
T  22021230 atattactattgagcaatttaagattgtttcacttgatcttggtacggagacatgcaaagagttgcttctcccgcgaggttttgatgaagtcccaagttt 22021329  T
Q  205 taagccatctctatgtgtgttgctggattgcctttg 240  Q
    | |||||||||||||||||||| |||||||| ||||    
T  22021330 tgagccatctctatgtgtgttgatggattgcatttg 22021365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 240
Target Start/End: Original strand, 22036933 - 22037059
Alignment:
Q  114 ttgagcaatttgtgattatttcacttgatttgggcactgagacatacaaagagttgcttccgcctcgaggttttgcagaagtaccacatgttaagccatc 213  Q
    ||||||||||| ||||| || |||||||| || | || ||||||| ||||||||||||||  |||||||||||||  ||||| |||  |  | |||||||    
T  22036933 ttgagcaatttatgattgttgcacttgatctgcgtacagagacatgcaaagagttgcttctccctcgaggttttgacgaagtcccatgttatgagccatc 22037032  T
Q  214 tctatgtgtgttgctggattgcctttg 240  Q
    ||||||||||||| |||||||| ||||    
T  22037033 tctatgtgtgttgatggattgcatttg 22037059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 22019217 - 22019326
Alignment:
Q  131 atttcacttgatttgggcactgagacatacaaagagttgcttccgcctcgaggttttgcagaagtaccacatgttaagccatctctatgtgtgttgctgg 230  Q
    |||||||||||| |||| || |||||||||||||||||| ||||||||||||| ||||   |||| |||| ||  |||||||| ||||||||  || |||    
T  22019217 atttcacttgatctggggacagagacatacaaagagttgattccgcctcgaggatttgatcaagtgccacttgccaagccatcactatgtgtactggtgg 22019316  T
Q  231 attgcctttg 240  Q
    ||||||||||    
T  22019317 attgcctttg 22019326  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 22088417 - 22088480
Alignment:
Q  91 ttatgattgcaagaatattattgttgagcaatttgtgattatttcacttgatttgggcactgag 154  Q
    |||| ||||||||  ||||| | |||||||||||||||||||||||||||||||||||||||||    
T  22088417 ttataattgcaagggtattactattgagcaatttgtgattatttcacttgatttgggcactgag 22088480  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 20126434 - 20126368
Alignment:
Q  91 ttatgattgcaagaatattattgttgagcaatttgtgattatttcacttgatttgggcactgagaca 157  Q
    |||||||||||||||||| | | || ||||||||||||||||||| ||||| |||||||||||||||    
T  20126434 ttatgattgcaagaatatcactattcagcaatttgtgattatttcccttgacttgggcactgagaca 20126368  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 14076542 - 14076587
Alignment:
Q  114 ttgagcaatttgtgattatttcacttgatttgggcactgagacata 159  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||    
T  14076542 ttgagcaatttgtgattatctcacttgatttggggactgagacata 14076587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 14386570 - 14386615
Alignment:
Q  114 ttgagcaatttgtgattatttcacttgatttgggcactgagacata 159  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||    
T  14386570 ttgagcaatttgtgattatctcacttgatttggggactgagacata 14386615  T

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Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 22063493 - 22063534
Alignment:
Q  118 gcaatttgtgattatttcacttgatttgggcactgagacata 159  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  22063493 gcaatttgtgattatttcacttgatttgggcactgaggcata 22063534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 29881094 - 29881151
Alignment:
Q  105 atattattgttgagcaatttgtgattatttcacttgatttgggcactgagacatacaa 162  Q
    |||||| |||||| |||||||| ||| |||||||||||||||| ||||||||||||||    
T  29881094 atattactgttgaccaatttgttattgtttcacttgatttggggactgagacatacaa 29881151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 9807676 - 9807718
Alignment:
Q  119 caatttgtgattatttcacttgatttgggcactgagacataca 161  Q
    |||||||||||| |||||||||||||||| |||||||||||||    
T  9807676 caatttgtgattctttcacttgatttgggtactgagacataca 9807718  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 22069935 - 22070001
Alignment:
Q  91 ttatgattgcaagaatattattgttgagcaatttgtgattatttcacttgatttgggcactgagaca 157  Q
    |||| ||| |||| |||||| | ||||| |||||||||||||||||||||||||||| || ||||||    
T  22069935 ttataatttcaaggatattactattgaggaatttgtgattatttcacttgatttgggtaccgagaca 22070001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 18323108 - 18323141
Alignment:
Q  5 gaatctgcacatgaactcaataagtaaaccatct 38  Q
    ||||||||||||||||||||||||||||||||||    
T  18323108 gaatctgcacatgaactcaataagtaaaccatct 18323141  T

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Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 19351290 - 19351193
Alignment:
Q  116 gagcaatttgtgattatttcacttgatttgggcactgagacatacaaagagttgcttccgcctcgaggttttgcagaagtaccacatgttaagccatc 213  Q
    ||||||||||||||||||||||||||| |||| || ||||||||  || ||||  | || ||||| |||||||  |||||||||| || | |||||||    
T  19351290 gagcaatttgtgattatttcacttgatctgggtacggagacatatcaacagtttttgccacctcgtggttttgttgaagtaccacctgctgagccatc 19351193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 29454327 - 29454278
Alignment:
Q  113 gttgagcaatttgtgattatttcacttgatttgggcactgagacatacaa 162  Q
    |||||||| ||||| |||||||||||||||||||| |||||||| |||||    
T  29454327 gttgagcagtttgttattatttcacttgatttggggactgagacgtacaa 29454278  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 157
Target Start/End: Original strand, 22080715 - 22080758
Alignment:
Q  114 ttgagcaatttgtgattatttcacttgatttgggcactgagaca 157  Q
    |||| |||||| ||||||||||||||||||||||||| ||||||    
T  22080715 ttgaacaatttatgattatttcacttgatttgggcaccgagaca 22080758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 20141064 - 20140998
Alignment:
Q  91 ttatgattgcaagaatattattgttgagcaatttgtgattatttcacttgatttgggcactgagaca 157  Q
    |||||||| ||| ||||||| | |||| |||||||||||| |||| ||| |||||||||| ||||||    
T  20141064 ttatgatttcaacaatattactcttgaccaatttgtgattgtttctctttatttgggcaccgagaca 20140998  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 20338748 - 20338814
Alignment:
Q  91 ttatgattgcaagaatattattgttgagcaatttgtgattatttcacttgatttgggcactgagaca 157  Q
    |||| ||||| ||||||||| |||| |||||||||||||||| ||  |||| ||| |||||||||||    
T  20338748 ttataattgcgagaatattactgttcagcaatttgtgattatatctattgacttgagcactgagaca 20338814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 20374749 - 20374687
Alignment:
Q  91 ttatgattgcaagaatattattgttgagcaatttgtgattatttcacttgatttgggcactga 153  Q
    |||||||||||| ||||||| | || |||||||| | |||||||| ||||||||||| |||||    
T  20374749 ttatgattgcaacaatattactattcagcaatttatcattatttctcttgatttgggtactga 20374687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 20058270 - 20058233
Alignment:
Q  124 tgtgattatttcacttgatttgggcactgagacataca 161  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  20058270 tgtgataatttcacttgatttgggaactgagacataca 20058233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 29867077 - 29867134
Alignment:
Q  105 atattattgttgagcaatttgtgattatttcacttgatttgggcactgagacatacaa 162  Q
    |||||| |||||| || ||||| ||| |||||||||||||||| ||||||| ||||||    
T  29867077 atattactgttgaccagtttgttattgtttcacttgatttggggactgagaaatacaa 29867134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 242
Target Start/End: Complemental strand, 3234181 - 3234030
Alignment:
Q  91 ttatgattgcaagaatattattgttgagcaatttgtgattatttcacttgatttgggcactgagacatacaaagagttgcttccgcctcgaggttttgca 190  Q
    |||||||||||||||||||  | ||||||||| |||||||||||||||| || || | |   |||||||||||||||||||||  |||| ||||||||      
T  3234181 ttatgattgcaagaatattccttttgagcaatatgtgattatttcactttatctgagtaaacagacatacaaagagttgcttcttcctcaaggttttgat 3234082  T
Q  191 gaagtaccacatgttaagccatctctatgtgtgttgctggattgcctttgct 242  Q
     |||| |||  | || |||||||||||||||| ||| |||||||||| ||||    
T  3234081 caagtgccatgttttgagccatctctatgtgttttgatggattgcctctgct 3234030  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 3625579 - 3625629
Alignment:
Q  112 tgttgagcaatttgtgattatttcacttgatttgggcactgagacatacaa 162  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||||||    
T  3625579 tgttgagcaatttgttattgtttcacttgatttggggactgagacatacaa 3625629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 27618338 - 27618410
Alignment:
Q  114 ttgagcaatttgtgattatttcacttgatttgggcactgagacatacaaagagttgcttccgcctcgaggttt 186  Q
    |||| ||||||||||||||||| ||||||||| | ||||||||| ||| | |||||||||| ||||| |||||    
T  27618338 ttgatcaatttgtgattatttcgcttgatttgagtactgagacacacacacagttgcttcctcctcggggttt 27618410  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 11971202 - 11971164
Alignment:
Q  117 agcaatttgtgattatttcacttgatttgggcactgaga 155  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  11971202 agcaatttgtgattatttcacttgattttggcactgaga 11971164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 20967545 - 20967619
Alignment:
Q  112 tgttgagcaatttgtgattatttcacttgatttgggcactgagacatacaaagagttgcttccgcctcgaggttt 186  Q
    |||||||||||||||||| ||||| ||||||||||| || ||||| |||| | | |||||||| ||||| |||||    
T  20967545 tgttgagcaatttgtgatcatttcccttgatttggggacagagacctacacacaattgcttcctcctcggggttt 20967619  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 6921579 - 6921528
Alignment:
Q  108 ttattgttgagcaatttgtgattatttcacttgatttgggcactgagacata 159  Q
    |||||||||| ||||||||||| || |||||||||||||| || ||||||||    
T  6921579 ttattgttgaacaatttgtgatgatctcacttgatttggggacagagacata 6921528  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 15961083 - 15961118
Alignment:
Q  122 tttgtgattatttcacttgatttgggcactgagaca 157  Q
    ||||||||| ||||||||||||||||||||||||||    
T  15961083 tttgtgattgtttcacttgatttgggcactgagaca 15961118  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 4366731 - 4366670
Alignment:
Q  101 aagaatattattgttgagcaatttgtgattatttcacttgatttgggcactgagacatacaa 162  Q
    ||||||||||  |||||||||||||| ||| |||| |||||| |||| || |||||||||||    
T  4366731 aagaatattaccgttgagcaatttgttattgtttcgcttgatctgggtacagagacatacaa 4366670  T

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