View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1853_low_2 (Length: 778)
Name: NF1853_low_2
Description: NF1853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1853_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 629; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 16 - 762
Target Start/End: Original strand, 6820493 - 6821239
Alignment:
| Q |
16 |
agagaaactcaaggctatgggtattccatttgttacacatgcattcagagagaagatgaagctcattgttgcagagtttaaaaaactgctcaagtacaat |
115 |
Q |
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| T |
6820493 |
agagaaactcaaggctatgggtatcccatttgttacacatgcattcagagagaagatgaagctcattgttgcagagtttaaaaaactgctccagtacaat |
6820592 |
T |
|
| Q |
116 |
ttaactttcattgatagagagttttcnnnnnnnnctttcattgatagagctcgagaaagctcaaccgcatcctctggtacggaaatcacatcagccatca |
215 |
Q |
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| T |
6820593 |
ttaactttcattgatagagagttttcaaaaaaaactttcattgatagagctcgagaaagctcaaccgcatcctctggtacggaaatcacatcagctatta |
6820692 |
T |
|
| Q |
216 |
aaagcaagctgnnnnnnnnnnnnnntctggaatcaagctcaaagcaagtacgaacggttatgaactcaatgtgtgttacattggatcaaatgcataacca |
315 |
Q |
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| T |
6820693 |
aaagcaagctgagaaaaatgaaaaatctggaatcaagctcaaagcaagtagtaacggttatgaactcaatatgtgttacattggatcaaatgcataacca |
6820792 |
T |
|
| Q |
316 |
gcttcggaaagcagaagaaacagaggggataaaggcttgtgtaaagcaactaaaggtcattgttcatgagctggaaaatttacaaccagaacagtatgta |
415 |
Q |
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| T |
6820793 |
gcttcggaaagctgaagaaacagaagggataaaggcttgtgtaaagcaactaaaggtcattgttcatgagctggaaaatttacaaccagaacagtatgta |
6820892 |
T |
|
| Q |
416 |
actggccctgagttcaatccaattgagatgaaaaatacaattgatcttcttcagcaattgacagaaacttgcaccatccgaagagaggattcagccaaag |
515 |
Q |
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| T |
6820893 |
actggcactgagttcaatccaattgagatgaaaaatacaattgatcttcttcagcaattgacagaaacttgcaccatccgaagagaggattcagccaaag |
6820992 |
T |
|
| Q |
516 |
ttgttggtttgaaaatcaaagaacaagatttggtcttgaatctgactgcaagcagtgataatgcttcgaaactttgcattgtggggatgaaaggtgtggg |
615 |
Q |
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| T |
6820993 |
ttgttggtttgaaaatcaaagaacaagatttggtcttgaatctgactgcaagcagtgataatgcttcgaaactttgcattgtggggatgaaaggtgtggg |
6821092 |
T |
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| Q |
616 |
gaagacaactctggcaaaggcagtttgttataacaaagttgttgtcaagcacttccctacccgagtctgggcaacagtaattgcaggagcaaccgcaacc |
715 |
Q |
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| T |
6821093 |
gaagacagctctggcaaaggcagtttgttataacaaagttgttgtcaagcacttcccaacccaagtctgggcaacagtaattgcaggagcaaccgcaacc |
6821192 |
T |
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| Q |
716 |
atgaaagttctgctcatggaaaacaacgggactaaaaaccaaacatt |
762 |
Q |
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| T |
6821193 |
atgaaagttctgctcatggaaaacaacgggactaaaaaccaaacatt |
6821239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 586 - 706
Target Start/End: Original strand, 7333387 - 7333507
Alignment:
| Q |
586 |
actttgcattgtggggatgaaaggtgtggggaagacaactctggcaaaggcagtttgttataacaaagttgttgtcaagcacttccctacccgagtctgg |
685 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| | | ||| ||||||||||| ||| |||||| |
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| T |
7333387 |
actttccattgtggggatgaaaggtgtggggaagacaactctggcaaaggtagtttattacaacaaagatatagtcgagcacttccctgtccgtgtctgg |
7333486 |
T |
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| Q |
686 |
gcaacagtaattgcaggagca |
706 |
Q |
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| T |
7333487 |
gtgacagtaactgaaggagca |
7333507 |
T |
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