View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1853_low_21 (Length: 213)

Name: NF1853_low_21

Description: NF1853

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1853_low_21

[»] chr3 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 168; E-Value: 3e-90

Query Start/End: Original strand, 18 - 197

Target Start/End: Original strand, 55081638 - 55081817

Alignment:

Q	18	attcactaactttataattgattttctgtagtatttcaacaaataggtaaatgctttgtttacaatatacaaattacaatagttgcgaagatatgttaca	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	55081638	attcactaactttataattgattttctgtagtatttctacaaataggtaaatgctttgtttacaatatacaaattacaatagttgcgaagatacgttaca	55081737	T

Q	118	gggccaaacataataaaaaatctttactaatatacactcttactcctattaagatcatagaaacaaattgcatcaatttt	197	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	55081738	gggccaaacataataaaaaatctttactattatacactcttactcctattaagatcatagaaacaaattgcatcaatttt	55081817	T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 18 - 103

Target Start/End: Original strand, 29272029 - 29272118

Alignment:

Q	18	attcactaactttataattgattttctgtagtatttcaacaaataggtaaatgctttgt----ttacaatatacaaattacaatagttgc	103	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29272029	attcaccaactttataaattattctttgtagtatttgaagaaacaggtaaaggatttgtatatttacaatctacaaattacaatagttgc	29272118	T

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