View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1853_low_3 (Length: 512)

Name: NF1853_low_3
Description: NF1853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1853_low_3
NF1853_low_3
[»] chr7 (31 HSPs)
chr7 (79-321)||(38338702-38338944)
chr7 (438-492)||(38338529-38338583)
chr7 (82-143)||(26771227-26771288)
chr7 (78-143)||(38273248-38273313)
chr7 (76-146)||(42603473-42603543)
chr7 (78-143)||(37714823-37714888)
chr7 (78-142)||(10094799-10094863)
chr7 (100-163)||(15017129-15017193)
chr7 (78-146)||(21991021-21991089)
chr7 (79-146)||(4621074-4621141)
chr7 (78-141)||(32587238-32587301)
chr7 (76-146)||(6622741-6622811)
chr7 (80-142)||(8180162-8180224)
chr7 (82-148)||(22493328-22493394)
chr7 (61-146)||(24988194-24988280)
chr7 (100-168)||(3266755-3266824)
chr7 (78-119)||(38649087-38649128)
chr7 (78-146)||(6646303-6646371)
chr7 (78-146)||(6667754-6667822)
chr7 (58-133)||(9137279-9137355)
chr7 (78-146)||(10624142-10624209)
chr7 (78-142)||(14810827-14810891)
chr7 (78-142)||(15257822-15257886)
chr7 (102-146)||(22747203-22747247)
chr7 (78-146)||(24319917-24319985)
chr7 (78-146)||(27535787-27535854)
chr7 (100-144)||(32643349-32643393)
chr7 (78-146)||(36253289-36253357)
chr7 (79-119)||(38277157-38277197)
chr7 (47-146)||(45457250-45457350)
chr7 (82-142)||(47296027-47296087)
[»] chr8 (17 HSPs)
chr8 (10-139)||(41431305-41431435)
chr8 (78-146)||(13570469-13570537)
chr8 (61-143)||(40490238-40490321)
chr8 (83-182)||(24210605-24210704)
chr8 (78-180)||(10338498-10338601)
chr8 (61-138)||(4928254-4928332)
chr8 (78-163)||(10951981-10952066)
chr8 (78-163)||(10959986-10960071)
chr8 (80-146)||(32778674-32778740)
chr8 (78-146)||(13575911-13575979)
chr8 (78-146)||(37612995-37613063)
chr8 (100-146)||(3204488-3204534)
chr8 (78-146)||(2024926-2024994)
chr8 (78-146)||(7579557-7579625)
chr8 (78-146)||(11162245-11162313)
chr8 (78-146)||(18204316-18204384)
chr8 (78-146)||(43936882-43936950)
[»] chr1 (22 HSPs)
chr1 (78-146)||(10304922-10304990)
chr1 (77-139)||(12370297-12370359)
chr1 (78-182)||(27535056-27535161)
chr1 (109-182)||(30678629-30678707)
chr1 (78-146)||(25032797-25032865)
chr1 (59-146)||(47551419-47551507)
chr1 (79-146)||(32784439-32784506)
chr1 (84-146)||(29551459-29551521)
chr1 (78-182)||(1141038-1141146)
chr1 (78-142)||(15312325-15312389)
chr1 (78-146)||(28677833-28677901)
chr1 (78-163)||(45193304-45193390)
chr1 (54-146)||(7995271-7995364)
chr1 (81-146)||(13999304-13999369)
chr1 (61-117)||(23791320-23791377)
chr1 (79-123)||(25278561-25278605)
chr1 (78-138)||(29726299-29726359)
chr1 (78-146)||(29938559-29938627)
chr1 (78-146)||(33486730-33486798)
chr1 (78-146)||(33938738-33938806)
chr1 (78-138)||(40862536-40862596)
chr1 (78-146)||(42276714-42276782)
[»] chr5 (19 HSPs)
chr5 (46-142)||(11647510-11647607)
chr5 (78-146)||(32309855-32309923)
chr5 (80-182)||(11734498-11734605)
chr5 (61-182)||(26293951-26294078)
chr5 (54-119)||(37425336-37425402)
chr5 (54-119)||(37425441-37425507)
chr5 (78-146)||(980720-980788)
chr5 (78-146)||(2555044-2555112)
chr5 (78-146)||(42781360-42781428)
chr5 (83-146)||(6635612-6635675)
chr5 (85-143)||(7151162-7151220)
chr5 (108-179)||(32755476-32755547)
chr5 (61-119)||(34844242-34844301)
chr5 (78-146)||(177798-177866)
chr5 (78-146)||(6281403-6281471)
chr5 (78-146)||(17095935-17096003)
chr5 (78-146)||(27241414-27241482)
chr5 (78-146)||(33164163-33164231)
chr5 (78-146)||(42609503-42609571)
[»] chr6 (19 HSPs)
chr6 (78-146)||(6295943-6296011)
chr6 (78-146)||(6302753-6302821)
chr6 (78-146)||(21942135-21942203)
chr6 (7-146)||(2488409-2488549)
chr6 (83-146)||(23637816-23637879)
chr6 (78-133)||(35039035-35039090)
chr6 (61-142)||(16328788-16328870)
chr6 (78-182)||(12481032-12481141)
chr6 (78-146)||(12654012-12654080)
chr6 (61-147)||(15985671-15985757)
chr6 (83-146)||(19402546-19402609)
chr6 (51-128)||(892600-892678)
chr6 (100-146)||(15589819-15589865)
chr6 (108-146)||(31395624-31395662)
chr6 (82-146)||(1418810-1418875)
chr6 (82-119)||(18248803-18248840)
chr6 (78-142)||(8978454-8978518)
chr6 (83-119)||(22530547-22530583)
chr6 (78-146)||(30813416-30813484)
[»] chr4 (18 HSPs)
chr4 (79-146)||(24568409-24568476)
chr4 (78-146)||(626253-626321)
chr4 (61-141)||(9255011-9255091)
chr4 (7-146)||(27090995-27091135)
chr4 (78-168)||(31932606-31932697)
chr4 (78-182)||(393927-394036)
chr4 (78-146)||(7083515-7083583)
chr4 (78-146)||(20887451-20887519)
chr4 (79-139)||(40198253-40198313)
chr4 (78-146)||(42197912-42197980)
chr4 (59-160)||(51958668-51958769)
chr4 (82-168)||(3159325-3159412)
chr4 (76-168)||(7860880-7860973)
chr4 (61-181)||(12716786-12716912)
chr4 (78-146)||(36124051-36124119)
chr4 (78-142)||(39837953-39838017)
chr4 (78-146)||(46268025-46268092)
chr4 (78-142)||(56062333-56062397)
[»] chr3 (26 HSPs)
chr3 (59-141)||(4817587-4817670)
chr3 (78-168)||(31462434-31462525)
chr3 (80-182)||(54238684-54238787)
chr3 (78-163)||(3961466-3961552)
chr3 (79-168)||(11225693-11225783)
chr3 (79-163)||(38379438-38379523)
chr3 (82-181)||(51256746-51256845)
chr3 (61-143)||(2148081-2148164)
chr3 (80-146)||(42167763-42167829)
chr3 (78-143)||(3457281-3457346)
chr3 (61-146)||(41868035-41868120)
chr3 (83-146)||(34960630-34960693)
chr3 (100-146)||(25111871-25111917)
chr3 (78-119)||(31730970-31731011)
chr3 (109-182)||(35175098-35175171)
chr3 (78-118)||(4019942-4019982)
chr3 (78-146)||(13701704-13701772)
chr3 (79-127)||(20044590-20044638)
chr3 (78-146)||(30155992-30156060)
chr3 (78-142)||(31270668-31270732)
chr3 (78-182)||(33637753-33637862)
chr3 (78-146)||(48401451-48401519)
chr3 (81-133)||(50981181-50981233)
chr3 (81-133)||(51084315-51084367)
chr3 (78-146)||(53155132-53155200)
chr3 (78-146)||(53402980-53403048)
[»] chr2 (23 HSPs)
chr2 (61-142)||(27665876-27665959)
chr2 (49-143)||(45693807-45693902)
chr2 (81-146)||(40039017-40039082)
chr2 (76-155)||(20570315-20570395)
chr2 (78-146)||(12705045-12705113)
chr2 (106-146)||(15435537-15435577)
chr2 (78-146)||(33839091-33839159)
chr2 (78-168)||(5754641-5754732)
chr2 (99-146)||(20607148-20607195)
chr2 (78-163)||(11561363-11561449)
chr2 (61-146)||(20560827-20560913)
chr2 (78-119)||(25622773-25622814)
chr2 (78-139)||(32711928-32711989)
chr2 (78-119)||(34471319-34471360)
chr2 (78-146)||(4739688-4739756)
chr2 (78-146)||(11798232-11798299)
chr2 (78-146)||(12890811-12890879)
chr2 (78-146)||(18089106-18089174)
chr2 (79-147)||(29938631-29938699)
chr2 (78-146)||(33012407-33012475)
chr2 (78-146)||(35333864-35333932)
chr2 (78-146)||(36868367-36868435)
chr2 (50-168)||(44589202-44589322)
[»] scaffold0294 (2 HSPs)
scaffold0294 (76-146)||(5892-5962)
scaffold0294 (78-146)||(3761-3829)
[»] scaffold0321 (1 HSPs)
scaffold0321 (54-146)||(6824-6917)
[»] scaffold0542 (1 HSPs)
scaffold0542 (78-146)||(4152-4220)
[»] scaffold0155 (1 HSPs)
scaffold0155 (78-146)||(35434-35502)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 79 - 321
Target Start/End: Complemental strand, 38338944 - 38338702
Alignment:
Q  79 atgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgattattttatctatttgaacgaatatcgtttatt 178  Q
    ||||||||||||||||    |||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38338944 atgttgtgagtttgttcatatattcattctttttgtttttaacaactttgaatttatattgtatcgattattctatctatttgaacgaatatcgtttatt 38338845  T
Q  179 tttggctagaaaaagtgacactaatgatcatcaaaccacatcttgaggggatttgaacttttgatgttgcaaagtcagacttttaccattgaatttcact 278  Q
    |||| | ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38338844 tttgtccagaaaaagtgacaataatgatcatcaaacaacatcttgaggggatttgaacttttgatgttgcaaggtcagacttttaccattgaatttcact 38338745  T
Q  279 tcatcaacaatgcagtcatgctcaaatcatgaaattgtggtat 321  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  38338744 tcatgaacaatgcagtcatgctcaaatcatgaaattgtggtat 38338702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 438 - 492
Target Start/End: Complemental strand, 38338583 - 38338529
Alignment:
Q  438 tccacagttagatcatgttacgtgaagctcaattctgctatgaatcagagcatga 492  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  38338583 tccacagttagatcatgttacacgaagctcaattctgctatgaatcagagcatga 38338529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 26771288 - 26771227
Alignment:
Q  82 ttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatc 143  Q
    ||||||||||||| || ||||||||||||||||||||| | |||||||||||||||||||||    
T  26771288 ttgtgagtttgtttgcatattcatcatttttgtttttaccgactttgaatttatattgtatc 26771227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 38273248 - 38273313
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatc 143  Q
    ||||||||||||||||||||  ||||||| |||||||||||||  |||||| ||||||||||||||    
T  38273248 gatgttgtgagtttgttagcaaattcatcctttttgtttttaaggactttggatttatattgtatc 38273313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 42603543 - 42603473
Alignment:
Q  76 tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||||  |  |||||||  ||||||||||| | | ||||||||||||||||||||||    
T  42603543 tagatgttgtgagtttgttcacagattcatccgttttgtttttagcgaatttgaatttatattgtatcgat 42603473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 37714823 - 37714888
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatc 143  Q
    ||||||||||||||||| || |||||||| ||||| |||||   |||||||||||| |||||||||    
T  37714823 gatgttgtgagtttgttcgcatattcatcttttttatttttcttaactttgaatttgtattgtatc 37714888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 10094799 - 10094863
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtat 142  Q
    |||||||||||||||||  |  ||||||| |||||||||||| ||| ||||||||| ||||||||    
T  10094799 gatgttgtgagtttgttcacagattcatcctttttgtttttagcaaatttgaatttctattgtat 10094863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 15017193 - 15017129
Alignment:
Q  100 attcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaa 163  Q
    |||||||||| || |||||||| | ||||||||| |||||||||||| ||||||||| |||||||    
T  15017193 attcatcattattatttttaacgaatttgaatttgtattgtatcgatgtattttatcaatttgaa 15017129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 21991021 - 21991089
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  | |||||||| |||||||||||| | | |||| |||| ||||||||||||    
T  21991021 gatgttgtgagtttgttcacatattcatcctttttgtttttagcgaatttggatttgtattgtatcgat 21991089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 4621141 - 4621074
Alignment:
Q  79 atgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||||||| |  ||||||| |||||||||||||| | |||| ||||  |||||||||||    
T  4621141 atgttgtgagtttgttaacagattcatcctttttgtttttaacgaatttggatttgaattgtatcgat 4621074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 32587301 - 32587238
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgta 141  Q
    ||||||||||||||||| || |||||||| ||||||||||||   |||||||| || |||||||    
T  32587301 gatgttgtgagtttgttcgcatattcatcctttttgtttttagtgactttgaaattgtattgta 32587238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 6622741 - 6622811
Alignment:
Q  76 tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||||||||| ||  ||||||  ||||| |||| ||||| |||| |||| ||||||||||||    
T  6622741 tagatgttgtgagtttgtttgcagattcatggtttttattttgaacaattttgtatttgtattgtatcgat 6622811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 8180162 - 8180224
Alignment:
Q  80 tgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtat 142  Q
    |||||||||||||||  | ||||||||||||||||||||| | | |||| |||| ||||||||    
T  8180162 tgttgtgagtttgttcacatattcatcatttttgtttttagcgaatttggatttgtattgtat 8180224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 22493328 - 22493394
Alignment:
Q  82 ttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgatta 148  Q
    |||||| |||||| ||| ||||||| |||||||||||| | ||||||||||| | ||||||| ||||    
T  22493328 ttgtgattttgttcgcgcattcatcctttttgtttttagcgactttgaatttgtgttgtatcaatta 22493394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 24988280 - 24988194
Alignment:
Q  61 ttttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||||  |||||||||||| ||||||    ||||||||||||||||||||| | | |||| |||| |||| |||||||    
T  24988280 ttttatactattaacatagatgttgtgattttgttcatatattcatcatttttgtttttagcgaatttggatttgtattatatcgat 24988194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 3266755 - 3266824
Alignment:
Q  100 attcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaacgaat 168  Q
    ||||||| |||||||||||||| | ||||||||| ||||||||| || || |||||| ||||||| ||||    
T  3266755 attcatcctttttgtttttaacgaatttgaatttgtattgtatcaatgtactttatcaatttgaatgaat 3266824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 38649128 - 38649087
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgttttta 119  Q
    ||||||||||||||||| || |||||||| ||||||||||||    
T  38649128 gatgttgtgagtttgttcgcatattcatcctttttgttttta 38649087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 6646371 - 6646303
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||| || |   |||||||||||||||||||| | | ||||||||| || |||||||||    
T  6646371 gatgttgtgagtttattcgtcgattcatcatttttgtttttaccgagtttgaatttgtactgtatcgat 6646303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 6667754 - 6667822
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||     ||||||| |||||||||||| | | ||||||||| ||||||||||||    
T  6667754 gatgttgtgagtttgttcatagattcatcctttttgtttttagcgaatttgaatttgtattgtatcgat 6667822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 9137279 - 9137355
Alignment:
Q  58 tcattttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaattt 133  Q
    ||||||||| |||||||  | |||| |||||||||||| |   ||||||| |||||||||||| |||||||||||||    
T  9137279 tcattttatgctattaacatggatgatgtgagtttgttcgtaaattcatcctttttgtttttagcaactttgaattt 9137355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 10624142 - 10624209
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||| |||||||||||| ||  ||||||| |||| ||||||||||||||| ||||| | ||||||||||    
T  10624142 gatgatgtgagtttgtttgcagattcatcctttt-gtttttaacaacttttaatttgtcttgtatcgat 10624209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 14810827 - 14810891
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtat 142  Q
    |||||||||||||||||  | |||||||||||||| |||||| ||| |||  |||| ||||||||    
T  14810827 gatgttgtgagtttgttcacatattcatcatttttatttttagcaattttctatttgtattgtat 14810891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 15257822 - 15257886
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtat 142  Q
    |||||||||||||||||  | |||||||||||||| |||||| ||| |||  |||| ||||||||    
T  15257822 gatgttgtgagtttgttcacatattcatcatttttatttttagcaattttctatttgtattgtat 15257886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 22747247 - 22747203
Alignment:
Q  102 tcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||| ||||||||||||  || ||||||||||||||||||||||    
T  22747247 tcatcctttttgtttttagtaaatttgaatttatattgtatcgat 22747203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 24319985 - 24319917
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  | |||||||| |||||||||||| | | |||  |||| ||||||||||||    
T  24319985 gatgttgtgagtttgttcacatattcatcttttttgtttttagcgaatttagatttgtattgtatcgat 24319917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 27535787 - 27535854
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||| | |||||||| || |||||||| || | |||| |||| ||||||||||||    
T  27535787 gatgttgtgagtttgtta-catattcatccttgttgtttttgacgaatttgtatttgtattgtatcgat 27535854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 32643349 - 32643393
Alignment:
Q  100 attcatcatttttgtttttaacaactttgaatttatattgtatcg 144  Q
    ||||||| |||||||||||||| | |||| |||||||||||||||    
T  32643349 attcatcctttttgtttttaacgaatttggatttatattgtatcg 32643393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 36253289 - 36253357
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  |||| || |||||||||||| ||| |||| |||| ||||||||||||    
T  36253289 gatgttgtgagtttgttcacagattcttcctttttgtttttagcaaatttggatttgtattgtatcgat 36253357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 38277157 - 38277197
Alignment:
Q  79 atgttgtgagtttgttagcgtattcatcatttttgttttta 119  Q
    ||||||| |||||||||||  ||||||||||||||||||||    
T  38277157 atgttgtaagtttgttagcagattcatcatttttgttttta 38277197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 45457350 - 45457250
Alignment:
Q  47 tatatattttatcattttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcga 145  Q
    ||||||||||  | |||||| |||||||| | |||||||||||||||||  |  ||||||| |||||||||||| | | ||||||||| || ||| ||||    
T  45457350 tatatattttgccgttttatgctattaatatggatgttgtgagtttgttcacagattcatcctttttgtttttagcgaatttgaatttgtactgtgtcga 45457251  T
Q  146 t 146  Q
    |    
T  45457250 t 45457250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 47296027 - 47296087
Alignment:
Q  82 ttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtat 142  Q
    |||||||||||||  |  ||||||| |||||||||||| |||||||  |||||||||||||    
T  47296027 ttgtgagtttgttcccagattcatcttttttgtttttagcaactttttatttatattgtat 47296087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 5e-51; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 41431435 - 41431305
Alignment:
Q  10 tattgtggagaattaaatatagccatattcataagtttatatattttatcattttatactattaat-tagatgttgtgagtttgttagcgtattcatcat 108  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||||    
T  41431435 tattgtggagaattaaatatagtcatattcataagtttatatattttgtcattttatactattaatatagatgttgtgagttcgttaacgtattcatcat 41431336  T
Q  109 ttttgtttttaacaactttgaatttatattg 139  Q
    ||||||||||||||||||||||||| |||||    
T  41431335 ttttgtttttaacaactttgaatttgtattg 41431305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 13570537 - 13570469
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  | |||||||| |||||||||||||||| ||| ||||| ||||||||||||    
T  13570537 gatgttgtgagtttgttcacatattcatcttttttgtttttaacaaatttaaatttgtattgtatcgat 13570469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 40490321 - 40490238
Alignment:
Q  61 ttttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatc 143  Q
    ||||||||||||||  | |||||||||||||||||  |  |||||||||||||||||||| ||| |||| ||||||||||||||    
T  40490321 ttttatactattaacatggatgttgtgagtttgttcacagattcatcatttttgtttttagcaaatttggatttatattgtatc 40490238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 24210605 - 24210704
Alignment:
Q  83 tgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaacgaatatcgtttattttt 181  Q
    ||||||||||||  |  ||||||| |||||||||||| ||| ||||||||| |||||||||||| || | |||| ||||||| |||||| ||||||||||    
T  24210605 tgtgagtttgttcacaaattcatc-tttttgtttttagcaaatttgaatttttattgtatcgatgtactctatcaatttgaatgaatattgtttattttt 24210703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 180
Target Start/End: Complemental strand, 10338601 - 10338498
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaacgaatatcgttta 176  Q
    |||||||||||||||||  | |||||||| |||||||||||| ||| ||||||||| ||||| || ||| || | |||  ||||||| ||||||| ||||    
T  10338601 gatgttgtgagtttgttcacatattcatcctttttgtttttagcaaatttgaatttctattgcattgatgtactctattaatttgaatgaatatcattta 10338502  T
Q  177 tttt 180  Q
    ||||    
T  10338501 tttt 10338498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 4928254 - 4928332
Alignment:
Q  61 ttttatactattaa-ttagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatatt 138  Q
    |||||||||||||| || ||||| ||||||||||| |   ||||||| |||||||||||||| ||||||||||| ||||    
T  4928254 ttttatactattaacttggatgtcgtgagtttgttcggagattcatcttttttgtttttaacgactttgaatttgtatt 4928332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 10952066 - 10951981
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaa 163  Q
    ||||||||||||||||| ||  |||||||||||||||||||||| ||||| ||||||| || ||| ||| || |||||| |||||||    
T  10952066 gatgttgtgagtttgtttgcagattcatcatttttgtttttaacgacttt-aatttattttatattgatgtactttatcaatttgaa 10951981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 10960071 - 10959986
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaa 163  Q
    ||||||||||||||||| ||  |||||||||||||||||||||| ||||| ||||||| || ||| ||| || |||||| |||||||    
T  10960071 gatgttgtgagtttgtttgcagattcatcatttttgtttttaacgacttt-aatttattttatattgatgtactttatcaatttgaa 10959986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 32778740 - 32778674
Alignment:
Q  80 tgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||||| ||  |||||||||||||||||||| | |||||| ||||  |||||||||||    
T  32778740 tgttgtgagtttgttcgcaaattcatcatttttgtttttagcgactttggatttgaattgtatcgat 32778674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 13575979 - 13575911
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||||||| ||  ||||||| |||||||||||| | |||||| || | ||||||||||||    
T  13575979 gatgttgtgagtttgttcgcaaattcatcctttttgtttttagcgactttggatatgtattgtatcgat 13575911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 37612995 - 37613063
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||| ||||||||||||  |  ||||||| |||||||||||||| | ||||||||| ||||||||||||    
T  37612995 gatgatgtgagtttgttcacagattcatcctttttgtttttaacgaatttgaatttgtattgtatcgat 37613063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 3204534 - 3204488
Alignment:
Q  100 attcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||||||||||   | ||||||||||||||||||||||    
T  3204534 attcatcatttttgtttttagtgaatttgaatttatattgtatcgat 3204488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 2024994 - 2024926
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  |||||||||||||||||||| | | |||| |||| |||| |||||||    
T  2024994 gatgttgtgagtttgttcacagattcatcatttttgtttttagcgaatttggatttgtattatatcgat 2024926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 7579625 - 7579557
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |   |||||| ||||||||| || ||| |||| |||||||||||||||||    
T  7579625 gatgttgtgagtttgttcacagtttcatcctttttgtttctagcaaatttggatttatattgtatcgat 7579557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 11162245 - 11162313
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  | |||||||| |||| ||||||| | | |||| |||| ||||||||||||    
T  11162245 gatgttgtgagtttgttcccatattcatccttttcgtttttagcgaatttggatttgtattgtatcgat 11162313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 18204316 - 18204384
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||| ||||||||||   |||||||  ||||||||||| | ||  ||||||||||||||||||||    
T  18204316 gatgttgtaagtttgttagtacattcatctattttgtttttagcgaccatgaatttatattgtatcgat 18204384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 43936950 - 43936882
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  ||||||| ||||||||||||   | ||||||||| ||||||||||||    
T  43936950 gatgttgtgagtttgttcacagattcatcctttttgtttttagtgaatttgaatttgtattgtatcgat 43936882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 10304922 - 10304990
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||||||| ||  |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  10304922 gatgttgtgagtttgtttgcagattcatcatttttgtttttatcaattttgaatttatattgtatcgat 10304990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 12370297 - 12370359
Alignment:
Q  77 agatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattg 139  Q
    ||||||||||| |||||||||| ||||||| |||||||||||| | |||||||||||||||||    
T  12370297 agatgttgtgaatttgttagcggattcatcctttttgtttttagcgactttgaatttatattg 12370359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 27535056 - 27535161
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaacgaatatcgttta 176  Q
    |||| ||||||||||||  |  ||||||  |||||||||||| | | ||||||||| |||||||||||| || | |||| ||||||| ||||||||||||    
T  27535056 gatgatgtgagtttgttcacagattcattctttttgtttttagcgaatttgaatttgtattgtatcgatgtactctatcaatttgaatgaatatcgttta 27535155  T
Q  177 tttttg 182  Q
    ||||||    
T  27535156 tttttg 27535161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 30678629 - 30678707
Alignment:
Q  109 ttttgtttttaacaactttgaatttatattgtatcgat-tattttatctattt----gaacgaatatcgtttatttttg 182  Q
    ||||||||||||||||||||||||| |||||||||||| |||| |||| ||||    ||| ||||||||||||||||||    
T  30678629 ttttgtttttaacaactttgaatttgtattgtatcgatatattctatcaatttgatggaatgaatatcgtttatttttg 30678707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 25032865 - 25032797
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||| |||||| ||  ||||||| |||||||||||| | ||||||||||| ||||||||||||    
T  25032865 gatgttgtgaatttgttcgcagattcatcctttttgtttttagcgactttgaatttgtattgtatcgat 25032797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 47551419 - 47551507
Alignment:
Q  59 cattttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||| |||||||  |||||||||||||||||||  | |||||||| |||||||||||| | | |||| |||| ||||||||||||    
T  47551419 cattttatgctattaacatagatgttgtgagtttgttcacatattcatcctttttgtttttagcgaatttggatttgtattgtatcgat 47551507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 32784439 - 32784506
Alignment:
Q  79 atgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||    |||||||||||||||||||| | | ||||||||| ||||||||||||    
T  32784439 atgttgtgagtttgttaaaaaattcatcatttttgtttttagcgaatttgaatttgtattgtatcgat 32784506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 29551521 - 29551459
Alignment:
Q  84 gtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||| || |||||||| |||||||||||| | |||||||| || ||||||||||||    
T  29551521 gtgagtttgtttgcatattcatcctttttgtttttagcgactttgaaattgtattgtatcgat 29551459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 1141038 - 1141146
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctattt----gaacgaatatcg 172  Q
    |||||||||||||| || || |||| || ||||||| ||||| |||||||||||||||||| ||| ||| |||| |||| ||||    ||| ||||||||    
T  1141038 gatgttgtgagtttatttgcatatttattatttttg-ttttagcaactttgaatttatattatattgatgtattctatcgatttaaaagaatgaatatcg 1141136  T
Q  173 tttatttttg 182  Q
    ||||||||||    
T  1141137 tttatttttg 1141146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 15312389 - 15312325
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtat 142  Q
    ||||||||||||||||| ||  ||||||| ||||| |||||||| |||||| |||| ||||||||    
T  15312389 gatgttgtgagtttgttcgcagattcatcctttttatttttaacgactttggatttgtattgtat 15312325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 28677901 - 28677833
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||||||| ||  ||||||| |||||||||||| | | |||| |||| ||||||||||||    
T  28677901 gatgttgtgagtttgttcgcagattcatcctttttgtttttagcgaatttggatttgtattgtatcgat 28677833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 45193390 - 45193304
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaa 163  Q
    |||| ||||||||||||  |  |||||||||||||||||||| | | |||| |||| |||||||||||| || |||||| |||||||    
T  45193390 gatgatgtgagtttgtttacagattcatcatttttgtttttagcgaatttggatttgtattgtatcgatgtactttatcaatttgaa 45193304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 7995364 - 7995271
Alignment:
Q  54 tttatcattttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||| |||||||  | |||||||||||||||||  |  ||||||| |||||||||||| | | |||| |||| ||||||| ||||    
T  7995364 tttatcattttatgctattaacatggatgttgtgagtttgttcacagattcatcctttttgtttttagcgaatttggatttgtattgtaccgat 7995271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 13999304 - 13999369
Alignment:
Q  81 gttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||| ||  ||||||||||||||||| ||   ||||||||||| |||| |||||||    
T  13999304 gttgtgagtttgttcgcagattcatcatttttgtttatagtgactttgaatttgtattctatcgat 13999369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 23791320 - 23791377
Alignment:
Q  61 ttttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttt 117  Q
    ||||||||||||||  || ||||||||||||||||  | |||||||||||||||||||    
T  23791320 ttttatactattaacataaatgttgtgagtttgttctcatattcatcatttttgtttt 23791377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 25278605 - 25278561
Alignment:
Q  79 atgttgtgagtttgttagcgtattcatcatttttgtttttaacaa 123  Q
    |||||||||||||||| ||  ||||||| ||||||||||||||||    
T  25278605 atgttgtgagtttgttcgcagattcatcctttttgtttttaacaa 25278561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 29726359 - 29726299
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatatt 138  Q
    |||||||||||||||||  |  |||||||||||||||||||| | | |||| |||||||||    
T  29726359 gatgttgtgagtttgttcacaaattcatcatttttgtttttagcgaatttggatttatatt 29726299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 29938559 - 29938627
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||| |||| ||  ||||||| ||| | |||||| | ||||||||||| ||||||||||||    
T  29938559 gatgttgtgagtgtgttcgcagattcatcctttctatttttagcgactttgaatttgtattgtatcgat 29938627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 33486798 - 33486730
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||| ||||||||||||  |  ||||||| |||||||||||||| | |||| |||| ||||||||||||    
T  33486798 gatgctgtgagtttgttcacagattcatcttttttgtttttaacgaatttggatttgtattgtatcgat 33486730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 33938806 - 33938738
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  ||||||| |||||||||||| | | |||| |||| ||||||||||||    
T  33938806 gatgttgtgagtttgttcacaaattcatcctttttgtttttagcgaatttggatttgtattgtatcgat 33938738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 40862596 - 40862536
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatatt 138  Q
    |||||| |||||||||| ||  ||||||||| ||||||||||||| ||| |||||| ||||    
T  40862596 gatgttttgagtttgttcgcagattcatcatctttgtttttaacagcttagaatttgtatt 40862536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 42276714 - 42276782
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||| ||||||||||||  |  ||||||| ||||| |||||| ||| ||||||||| ||||||||||||    
T  42276714 gatgctgtgagtttgttcacagattcatcctttttatttttagcaaatttgaatttgtattgtatcgat 42276782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 11647510 - 11647607
Alignment:
Q  46 ttatatattttatcattttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtat 142  Q
    |||| |||||| |||||||| | ||||||  | ||||||||||||||||  || ||||||||||||||||||||| | ||||||||||| ||||||||    
T  11647510 ttatgtattttgtcattttaaattattaacgtggatgttgtgagtttgtacgcatattcatcatttttgtttttagcgactttgaatttgtattgtat 11647607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 32309855 - 32309923
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||||||| ||  ||||||| ||||| |||||||| |||||||||||||||| |||||||    
T  32309855 gatgttgtgagtttgttcgcagattcatcttttttatttttaacgactttgaatttatattatatcgat 32309923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 11734605 - 11734498
Alignment:
Q  80 tgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatt----tgaacgaatatcgtt 174  Q
    |||||||||||||||  | |||||||| |||||||||||| | | ||||||||| |||||||||||| || |||||| |||    |||| ||||||||||    
T  11734605 tgttgtgagtttgttcacatattcatcctttttgtttttagcgaatttgaatttgtattgtatcgatgtactttatcaatttgaatgaatgaatatcgtt 11734506  T
Q  175 tatttttg 182  Q
    ||||||||    
T  11734505 tatttttg 11734498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 26293951 - 26294078
Alignment:
Q  61 ttttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcga-ttattttatctat 158  Q
    |||||| |||||||| | |||||||||||||||||  | |||||||| |||||||||||| | | ||||||||| |||||||||||  || | |||||||    
T  26293951 ttttatgctattaatatggatgttgtgagtttgttcacatattcatcctttttgtttttagcgaatttgaatttgtattgtatcgacgtactctatctat 26294050  T
Q  159 t----tgaacgaatatcgtttatttttg 182  Q
    |    |||| ||||||||||||||||||    
T  26294051 ttgaatgaatgaatatcgtttatttttg 26294078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 37425336 - 37425402
Alignment:
Q  54 tttatcattttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgttttta 119  Q
    |||||||||||||||||||||  ||||||||||||||||| |  | |||||||||||||||||||||    
T  37425336 tttatcattttatactattaacatagatgttgtgagtttgatcacatattcatcatttttgttttta 37425402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 37425441 - 37425507
Alignment:
Q  54 tttatcattttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgttttta 119  Q
    ||||||||||||| |||||||  |||||||||||||||||||  | |||||||||||||||||||||    
T  37425441 tttatcattttatgctattaacatagatgttgtgagtttgttcacatattcatcatttttgttttta 37425507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 980788 - 980720
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  | |||||||| ||||| |||||||| | ||| ||||||||||||||||||    
T  980788 gatgttgtgagtttgttcacatattcatcctttttatttttaacgaatttaaatttatattgtatcgat 980720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 2555112 - 2555044
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  | |||||||| ||||||||||||| || |||| |||| ||||||||||||    
T  2555112 gatgttgtgagtttgttcacatattcatcctttttgtttttaagaaatttggatttgtattgtatcgat 2555044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 42781360 - 42781428
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||| |  ||||||| ||||| |||||| | ||||||||||| ||||||||||||    
T  42781360 gatgttgtgagtttgttaacaaattcatcctttttatttttagcgactttgaatttgtattgtatcgat 42781428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 6635612 - 6635675
Alignment:
Q  83 tgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||  |  ||||||| |||||||||||||| | ||||||||||||||||||||||    
T  6635612 tgtgagtttgttcacagattcatcctttttgtttttaacgaatttgaatttatattgtatcgat 6635675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 7151162 - 7151220
Alignment:
Q  85 tgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatc 143  Q
    |||||||||| | | ||||||| |||||||||||||| ||||||||||| |||||||||    
T  7151162 tgagtttgttcgtggattcatcttttttgtttttaacgactttgaatttgtattgtatc 7151220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 32755476 - 32755547
Alignment:
Q  108 tttttgtttttaacaactttgaatttatattgtatcgattattttatctatttgaacgaatatcgtttattt 179  Q
    |||||||||||| | | ||| ||||| |||||||| ||||| | |||| ||||||| |||||||||||||||    
T  32755476 tttttgtttttagcgattttaaatttgtattgtatggattactctatcaatttgaatgaatatcgtttattt 32755547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 34844242 - 34844301
Alignment:
Q  61 ttttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgttttta 119  Q
    ||||||||||||||  | |||||||||||||||||  | |||||||||||||||||||||    
T  34844242 ttttatactattaacatggatgttgtgagtttgttcacatattcatcatttttgttttta 34844301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 177866 - 177798
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  ||||||| |||||||||||| | | |||| |||| ||||||||||||    
T  177866 gatgttgtgagtttgttcacagattcatcctttttgtttttagcgaatttggatttgtattgtatcgat 177798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 6281403 - 6281471
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||| ||||||||||||  |  ||||||| |||||||||||| | | ||||||||| ||||||||||||    
T  6281403 gatgatgtgagtttgttcacagattcatcctttttgtttttagcgaatttgaatttgtattgtatcgat 6281471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 17096003 - 17095935
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||| ||||||||||||  |  ||||||| |||||||||||| | | ||||||||| ||||||||||||    
T  17096003 gatgatgtgagtttgttcacagattcatcctttttgtttttagcgaatttgaatttgtattgtatcgat 17095935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 27241414 - 27241482
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||||||| ||  ||||||| |||||||||||| | | |||  |||| ||||||||||||    
T  27241414 gatgttgtgagtttgttcgcagattcatcctttttgtttttagcgaatttagatttctattgtatcgat 27241482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 33164231 - 33164163
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||| ||||||||||||  || |||||||  ||||||||||| ||| ||||||||| |||| |||||||    
T  33164231 gatgatgtgagtttgtttacggattcatcccttttgtttttagcaaatttgaatttgtattatatcgat 33164163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 42609503 - 42609571
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  ||||||| ||||| |||||| | | ||||||||| ||||||||||||    
T  42609503 gatgttgtgagtttgttcacaaattcatcttttttctttttagcgaatttgaatttgtattgtatcgat 42609571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 6296011 - 6295943
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  || |||| ||||||||||||||| ||| ||||||||| ||||||||||||    
T  6296011 gatgttgtgagtttgttcacggattcgtcatttttgtttttagcaaatttgaatttgtattgtatcgat 6295943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 6302821 - 6302753
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  || |||| ||||||||||||||| ||| ||||||||| ||||||||||||    
T  6302821 gatgttgtgagtttgttcacggattcgtcatttttgtttttagcaaatttgaatttgtattgtatcgat 6302753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 21942203 - 21942135
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||||||| ||  ||||||||||||| |||||||||| ||||||||| |||| |||||||    
T  21942203 gatgttgtgagtttgtttgcagattcatcatttttatttttaacaattttgaatttttattatatcgat 21942135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 2488409 - 2488549
Alignment:
Q  7 gagtattgtggagaattaaatatagccatattcataagtttatatattttatcattttatactattaat-tagatgttgtgagtttgttagcgtattcat 105  Q
    ||||||| |||||| ||||| |||| || |||  ||||  || ||| ||| || |||||| |||||||  |||||||||| |||||||| || |||| ||    
T  2488409 gagtattctggagacttaaacatagtcacatttgtaagcatagatactttgtcgttttatgctattaacatagatgttgtaagtttgttcgcatatttat 2488508  T
Q  106 catttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    | |||||||||||||  |||||| |||| ||||||||||||    
T  2488509 cctttttgtttttaatgactttggatttgtattgtatcgat 2488549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 23637879 - 23637816
Alignment:
Q  83 tgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||  | ||||||||||||||||||||| |||  |||||||| ||||||||||||    
T  23637879 tgtgagtttgttcacatattcatcatttttgtttttagcaaaattgaatttgtattgtatcgat 23637816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 35039035 - 35039090
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaattt 133  Q
    ||||||||||||||||| ||  ||| |||||||||||||||||| |||||||||||    
T  35039035 gatgttgtgagtttgttcgcagatttatcatttttgtttttaacgactttgaattt 35039090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 16328870 - 16328788
Alignment:
Q  61 ttttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtat 142  Q
    |||||| |||||||| | |||||||| |||||||| || |||||||| ||||||||| || | ||||||||||| ||||||||    
T  16328870 ttttatgctattaatatggatgttgtaagtttgtttgcatattcatcttttttgtttatagcgactttgaatttgtattgtat 16328788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 12481141 - 12481032
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatt----tgaacgaatatcg 172  Q
    |||| ||||||||||||  |  ||||||| |||||||||||| ||| |||| |||| |||||||||||| || |||||| |||    |||| ||||||||    
T  12481141 gatgatgtgagtttgttcacagattcatcttttttgtttttagcaaatttggatttgtattgtatcgatgtactttatcaatttgaatgaatgaatatcg 12481042  T
Q  173 tttatttttg 182  Q
    ||||||||||    
T  12481041 tttatttttg 12481032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 12654080 - 12654012
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||| |||||||||||| ||  |||||||||||||||||||| | |||||| | || ||||||||||||    
T  12654080 gatgatgtgagtttgttcgcagattcatcatttttgtttttagcgactttggaattgtattgtatcgat 12654012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 15985757 - 15985671
Alignment:
Q  61 ttttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgatt 147  Q
    ||||||||||||||| ||||||| ||  |||| || ||  ||||||| |||||||||||| | ||||||||| |||||||||||||||    
T  15985757 ttttatactattaatatagatgtggtatgtttattcgcagattcatc-tttttgtttttagcgactttgaatctatattgtatcgatt 15985671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 19402609 - 19402546
Alignment:
Q  83 tgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||  | |||||||| |||||||||||||| | |||| |||| ||||||||||||    
T  19402609 tgtgagtttgttcacatattcatcctttttgtttttaacgaatttggatttgtattgtatcgat 19402546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 892600 - 892678
Alignment:
Q  51 tattttatcattttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttg 128  Q
    ||||||||| ||||||| ||||||  | ||||| ||||||||||| ||  || ||||||||||||||||||||| ||||    
T  892600 tattttatcgttttatattattaacatggatgtcgtgagtttgttcgcagatccatcatttttgtttttaacaaatttg 892678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 15589865 - 15589819
Alignment:
Q  100 attcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||| |||||||||||| ||| |||| |||||||||||||||||    
T  15589865 attcatcctttttgtttttagcaaatttggatttatattgtatcgat 15589819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 31395624 - 31395662
Alignment:
Q  108 tttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  31395624 tttttgtttttaacaactttgaatttggattgtatcgat 31395662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 1418875 - 1418810
Alignment:
Q  82 ttgtgagtttgttagcgtattcatcattt-ttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||| ||  ||||||| ||| ||||||||| | |||||||||||||||| |||||||    
T  1418875 ttgtgagtttgttcgcagattcatcctttattgtttttagcgactttgaatttatattttatcgat 1418810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 18248840 - 18248803
Alignment:
Q  82 ttgtgagtttgttagcgtattcatcatttttgttttta 119  Q
    ||||||||||||| || |||||||||||||||||||||    
T  18248840 ttgtgagtttgttcgcatattcatcatttttgttttta 18248803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 8978518 - 8978454
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtat 142  Q
    ||||||||||||||||| ||   |||||| |||||||||||  | ||||||||||| ||||||||    
T  8978518 gatgttgtgagtttgttcgcaatttcatcttttttgtttttggcgactttgaatttgtattgtat 8978454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 22530547 - 22530583
Alignment:
Q  83 tgtgagtttgttagcgtattcatcatttttgttttta 119  Q
    |||||||||||| || |||||||||||||||||||||    
T  22530547 tgtgagtttgttcgcatattcatcatttttgttttta 22530583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 30813416 - 30813484
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||| ||||||||||||  |  ||||||| |||||||||||| | | ||||||||| ||||||||||||    
T  30813416 gatgatgtgagtttgttcacagattcatcctttttgtttttagcgaatttgaatttgtattgtatcgat 30813484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 24568476 - 24568409
Alignment:
Q  79 atgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||||||  | |||||||| |||||||||||| | | ||||||||||||||||||||||    
T  24568476 atgttgtgagtttgttcacatattcatcctttttgtttttagcgaatttgaatttatattgtatcgat 24568409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 626321 - 626253
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||| |||||  | |||||||| |||||||||||| ||| ||||||||| ||||||||||||    
T  626321 gatgttgtgagcttgttcacatattcatcctttttgtttttagcaaatttgaatttgtattgtatcgat 626253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 9255091 - 9255011
Alignment:
Q  61 ttttatactattaattagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgta 141  Q
    |||||| |||||||   ||| ||||||||| ||| | | |||||||||||||||||||||||||||| ||||| |||||||    
T  9255091 ttttatgctattaacatgatattgtgagttggtttgaggattcatcatttttgtttttaacaactttaaatttgtattgta 9255011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 27090995 - 27091135
Alignment:
Q  7 gagtattgtggagaattaaatatagccatattcataagtttatatattttatcattttatactattaat-tagatgttgtgagtttgttagcgtattcat 105  Q
    ||||||| |||||| ||||| |||| || |||  ||||  || ||| ||| || |||||| |||||||  |||||||||| |||||||| || |||| ||    
T  27090995 gagtattctggagacttaaacatagtcacatttgtaagcatagatactttgtcgttttatgctattaacatagatgttgtaagtttgttcgcatatttat 27091094  T
Q  106 catttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    | |||||||||||||  |||||| |||| ||||||||||||    
T  27091095 cctttttgtttttaatgactttggatttgtattgtatcgat 27091135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 31932606 - 31932697
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaacgaat 168  Q
    |||||| |||||||||| || |||||||  |||||||||||||| | ||||||||| |||||| ||||| || |||||| ||||||| ||||    
T  31932606 gatgttatgagtttgttcgcatattcatactttttgtttttaacgattttgaatttgtattgtgtcgatgtactttatcaatttgaatgaat 31932697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 394036 - 393927
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatt----tgaacgaatatcg 172  Q
    |||||||||||||||||  |  ||||| | |||||||||||||| | |||| |||| |||||||||||| || |||||| |||    |||| ||||||||    
T  394036 gatgttgtgagtttgttcacagattcaccctttttgtttttaacgaatttggatttgtattgtatcgatgtactttatcaatttgaatgaatgaatatcg 393937  T
Q  173 tttatttttg 182  Q
    ||||||||||    
T  393936 tttatttttg 393927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 7083583 - 7083515
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  ||||||| ||||| |||||| | | ||||||||||||||||||||||    
T  7083583 gatgttgtgagtttgttcacagattcatcctttttatttttagcgaatttgaatttatattgtatcgat 7083515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 20887519 - 20887451
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  ||||||| |||||||||||| | | |||| |||||||||||||||||    
T  20887519 gatgttgtgagtttgttcacagattcatcttttttgtttttagcgaatttggatttatattgtatcgat 20887451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 40198313 - 40198253
Alignment:
Q  79 atgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattg 139  Q
    |||||||||||||||| |   | |||||||||||||||||||| ||||||||||| |||||    
T  40198313 atgttgtgagtttgttcgtagactcatcatttttgtttttaacgactttgaatttgtattg 40198253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 42197912 - 42197980
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  || |||| |||||||||||| ||| ||||||||| ||||||||||||    
T  42197912 gatgttgtgagtttgttcacagatccatcctttttgtttttagcaaatttgaatttgtattgtatcgat 42197980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 51958668 - 51958769
Alignment:
Q  59 cattttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcga-ttattttatct 156  Q
    ||||||||||||||||  | |||||||||| |||||| |   |||| ||||||||||||||||| | ||||||||  ||||||||||| ||||||||||     
T  51958668 cattttatactattaacgtggatgttgtgaatttgttcgtaaattcttcatttttgtttttaacgagtttgaatt--tattgtatcgatttattttatca 51958765  T
Q  157 attt 160  Q
    ||||    
T  51958766 attt 51958769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 3159325 - 3159412
Alignment:
Q  82 ttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaacgaat 168  Q
    ||||||| ||||| ||  ||||||| ||||||||||||   ||||||||||| |||||||||||| || |||||| ||||||| ||||    
T  3159325 ttgtgagattgtttgcagattcatcctttttgtttttagtgactttgaatttgtattgtatcgatgtactttatcaatttgaatgaat 3159412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 7860973 - 7860880
Alignment:
Q  76 tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaacgaat 168  Q
    |||||||||||||||| ||  |  ||||||  |||||||||||||| | ||||||||| || ||||||||| |||| |||| ||||||| ||||    
T  7860973 tagatgttgtgagtttatttacagattcattctttttgtttttaacgaatttgaatttgtactgtatcgatgtattctatcaatttgaaagaat 7860880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 12716912 - 12716786
Alignment:
Q  61 ttttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctat 158  Q
    ||||||||||||||| | |||||||||||||| || ||  |||||||||| || ||||||    |||||||| | |||||||||||| || |||||| ||    
T  12716912 ttttatactattaatatggatgttgtgagtttcttcgcagattcatcattcttatttttagtgcctttgaatatgtattgtatcgatgtaatttatcaat 12716813  T
Q  159 ttgaac----gaatatcgtttattttt 181  Q
    |||||     |||||||||||||||||    
T  12716812 ttgaataaatgaatatcgtttattttt 12716786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 36124119 - 36124051
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  ||||||| |||||||||||| | | |||| |||| ||||||||||||    
T  36124119 gatgttgtgagtttgttcacagattcatcctttttgtttttagcgaatttggatttgtattgtatcgat 36124051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 39837953 - 39838017
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtat 142  Q
    |||||||||||||||||  |  ||||||| |||||||||||| ||| |||| |||| ||||||||    
T  39837953 gatgttgtgagtttgttcacagattcatcctttttgtttttagcaaatttggatttctattgtat 39838017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 46268025 - 46268092
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||| | |||||||| || |||||||| || | |||| |||| ||||||||||||    
T  46268025 gatgttgtgagtttgtta-catattcatccttgttgtttttgacgaatttgtatttgtattgtatcgat 46268092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 56062333 - 56062397
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtat 142  Q
    |||||||| |||||||| |  |||| ||| |||||||||||| | ||||||||||| ||||||||    
T  56062333 gatgttgtaagtttgttcgtatattaatcctttttgtttttagcgactttgaatttgtattgtat 56062397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 4817670 - 4817587
Alignment:
Q  59 cattttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgta 141  Q
    ||||||||||||||||  | |||||||||||||||||  | |||||||  |||||||||||||| | |||||||||||||||||    
T  4817670 cattttatactattaacatggatgttgtgagtttgttcacatattcatgctttttgtttttaacgaatttgaatttatattgta 4817587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 31462525 - 31462434
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaacgaat 168  Q
    |||||| |||||||||| || ||||||||||||||||||||| | | ||| ||||| |||||||||||| || |||||| ||||||| ||||    
T  31462525 gatgttttgagtttgttcgcatattcatcatttttgtttttagcgaatttaaatttgtattgtatcgatgtactttatcaatttgaatgaat 31462434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 54238787 - 54238684
Alignment:
Q  80 tgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaacgaatatcgtttatt 178  Q
    |||||||||||||||  |  ||||||| ||||| |||||| | | ||||||||| ||||||||| || || |||||| ||||||| ||||||||||||||    
T  54238787 tgttgtgagtttgttcacagattcatcctttttatttttagcgaatttgaatttgtattgtatcaatgtactttatcaatttgaatgaatatcgtttatt 54238688  T
Q  179 tttg 182  Q
    ||||    
T  54238687 tttg 54238684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 3961552 - 3961466
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaa 163  Q
    ||||||||||||||||| ||  ||||||||||||||||| ||   ||||||||||| |||||||||||| || |||||| |||||||    
T  3961552 gatgttgtgagtttgtttgcaaattcatcatttttgtttatagtgactttgaatttgtattgtatcgatatactttatcaatttgaa 3961466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 11225693 - 11225783
Alignment:
Q  79 atgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaacgaat 168  Q
    ||||||||| |||||| ||  |||| || |||||||||||||||||||| ||||| |||||||||||| |||| |||| ||||||| ||||    
T  11225693 atgttgtgattttgttcgcaaattcgtcctttttgtttttaacaactttaaatttctattgtatcgatatattatatcaatttgaatgaat 11225783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 38379523 - 38379438
Alignment:
Q  79 atgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaa 163  Q
    ||||||||||||||||  |  ||| ||| |||||||||||||||||||||||||| ||||||||| || || |||||| |||||||    
T  38379523 atgttgtgagtttgttcacaaatttatcctttttgtttttaacaactttgaatttgtattgtatcaatgtactttatcaatttgaa 38379438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 51256746 - 51256845
Alignment:
Q  82 ttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaacgaatatcgtttatttt 180  Q
    ||||||||||||| ||  ||||||||||||| ||||||   ||||| ||||| |||||||||||| || | |||| ||||||| ||||||||||||||||    
T  51256746 ttgtgagtttgtttgcagattcatcatttttatttttattgacttt-aatttgtattgtatcgatatactctatcaatttgaatgaatatcgtttatttt 51256844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 2148081 - 2148164
Alignment:
Q  61 ttttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatc 143  Q
    |||||| |||||||| | ||||||||||||||||| ||  ||||||| ||||||||| ||   |||||||||||||||||||||    
T  2148081 ttttatgctattaatatggatgttgtgagtttgttcgcaaattcatcctttttgtttatagtgactttgaatttatattgtatc 2148164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 42167829 - 42167763
Alignment:
Q  80 tgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||| |||||||| ||  ||||| |||||||||||||| ||| ||| ||||||||||||||||||    
T  42167829 tgttgtaagtttgtttgcagattcaccatttttgtttttagcaattttaaatttatattgtatcgat 42167763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 3457281 - 3457346
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatc 143  Q
    ||||||||||||||||| ||  |||||||||||||||||||| | | |||| |||| |||||||||    
T  3457281 gatgttgtgagtttgttcgcaaattcatcatttttgtttttagcgaatttggatttgtattgtatc 3457346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 41868120 - 41868035
Alignment:
Q  61 ttttatactattaattagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||| |||||||   |||| ||||||||||||  | |||||||| |||||||||||| | | ||||||||| ||||||||||||    
T  41868120 ttttatgctattaacatgatggtgtgagtttgttcacatattcatcctttttgtttttagcgaatttgaatttgtattgtatcgat 41868035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 34960693 - 34960630
Alignment:
Q  83 tgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||  | |||||||| |||||||||||| | | |||| |||||||||||||||||    
T  34960693 tgtgagtttgtttacatattcatcctttttgtttttagcgaatttggatttatattgtatcgat 34960630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 25111917 - 25111871
Alignment:
Q  100 attcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||| ||||| ||||||| ||||||||||||||||| |||||||    
T  25111917 attcatcctttttctttttaataactttgaatttatattatatcgat 25111871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 31730970 - 31731011
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgttttta 119  Q
    ||||||||||||||||| || |||||||| ||||||||||||    
T  31730970 gatgttgtgagtttgttcgcatattcatcctttttgttttta 31731011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 35175098 - 35175171
Alignment:
Q  109 ttttgtttttaacaactttgaatttatattgtatcgattattttatctatttgaacgaatatcgtttatttttg 182  Q
    |||||||||||   | |||| |||| ||||||||||| || | |||| ||||||| ||||||||||||||||||    
T  35175098 ttttgtttttagtgaatttggatttgtattgtatcgagtactatatcaatttgaatgaatatcgtttatttttg 35175171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 4019942 - 4019982
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgttttt 118  Q
    ||||||||||||||||| ||  |||||||||||||||||||    
T  4019942 gatgttgtgagtttgtttgcagattcatcatttttgttttt 4019982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 13701772 - 13701704
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||     ||||||| |||||||||||| | | ||||||||| ||||||||||||    
T  13701772 gatgttgtgagtttgttcaaagattcatcctttttgtttttagcgaatttgaatttgtattgtatcgat 13701704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 20044638 - 20044590
Alignment:
Q  79 atgttgtgagtttgttagcgtattcatcatttttgtttttaacaacttt 127  Q
    ||||||| |||||||| || || ||||||||||| ||||||||||||||    
T  20044638 atgttgttagtttgttcgcataatcatcatttttatttttaacaacttt 20044590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 30156060 - 30155992
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  | ||||| || |||||||||||| | | |||| |||| ||||||||||||    
T  30156060 gatgttgtgagtttgttcacatattcttcctttttgtttttagcgaatttggatttgtattgtatcgat 30155992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 31270668 - 31270732
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtat 142  Q
    |||||||||||||||||  |  ||||||| |||||||||||| | | ||||||||| ||||||||    
T  31270668 gatgttgtgagtttgttcacagattcatcctttttgtttttagcgaatttgaatttgtattgtat 31270732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 33637753 - 33637862
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatt----tgaacgaatatcg 172  Q
    |||| ||||||||||||  |  ||||||| |||||||||||| | | |||| |||| |||||||||||| || |||||| |||    |||| ||||||||    
T  33637753 gatgatgtgagtttgttcacagattcatcctttttgtttttagcgaatttggatttgtattgtatcgatgtactttatcaatttgaatgaatgaatatcg 33637852  T
Q  173 tttatttttg 182  Q
    ||||||||||    
T  33637853 tttatttttg 33637862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 48401451 - 48401519
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||| ||||||||||||  |  ||||||| ||||| |||||| | | ||||||||||||||||||||||    
T  48401451 gatgatgtgagtttgttcacagattcatcctttttatttttagcgaatttgaatttatattgtatcgat 48401519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 50981233 - 50981181
Alignment:
Q  81 gttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaattt 133  Q
    ||||||||||| || || ||||||||||||||||||||| | ||||| |||||    
T  50981233 gttgtgagtttattcgcatattcatcatttttgtttttagcgactttaaattt 50981181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 51084367 - 51084315
Alignment:
Q  81 gttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaattt 133  Q
    ||||||||||| || || ||||||||||||||||||||| | ||||| |||||    
T  51084367 gttgtgagtttattcgcatattcatcatttttgtttttagcgactttaaattt 51084315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 53155200 - 53155132
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  |||  ||||||||||||||| | | ||||||||| ||||||||||||    
T  53155200 gatgttgtgagtttgttcacagattattcatttttgtttttagcgaatttgaatttgtattgtatcgat 53155132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 53402980 - 53403048
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||| ||||||||  | ||||||||||||||||||||| | | |||  |||| ||||||||||||    
T  53402980 gatgttgttagtttgttcacatattcatcatttttgtttttagcgaatttagatttgtattgtatcgat 53403048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 27665876 - 27665959
Alignment:
Q  61 ttttatactattaat-tagatgttgtgagtttgttagcg-tattcatcatttttgtttttaacaactttgaatttatattgtat 142  Q
    ||||||||||||||  ||||||||||||||||||| ||  ||||||||||||||||||||| ||| ||| ||||| ||||||||    
T  27665876 ttttatactattaacatagatgttgtgagtttgttcgcaatattcatcatttttgtttttagcaattttaaatttgtattgtat 27665959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 45693902 - 45693807
Alignment:
Q  49 tatattttatcattttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatc 143  Q
    |||| ||| ||||||||| |||||||  |||||| |||||||||||| ||  | |||||||||||||||||| | ||||||||||| |||||||||    
T  45693902 tatactttgtcattttatgctattaacatagatgatgtgagtttgtttgcagaatcatcatttttgtttttagcgactttgaatttctattgtatc 45693807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 40039082 - 40039017
Alignment:
Q  81 gttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||| |   |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  40039082 gttgtgagtttgttcgtagattcatcatttttgtttttaatgactttgaatttttattgtatcgat 40039017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 20570315 - 20570395
Alignment:
Q  76 tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatc 155  Q
    |||||| |||||||||||| || ||||||||||||||||||||| | | |||||||||  |||||||| || |||||||||    
T  20570315 tagatgctgtgagtttgttcgcatattcatcatttttgtttttagcgattttgaatttgaattgtatcaatgtattttatc 20570395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 12705045 - 12705113
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  |||||||||||||||||||| | | |||| |||| ||||||||||||    
T  12705045 gatgttgtgagtttgttcacagattcatcatttttgtttttagcgaatttggatttgtattgtatcgat 12705113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 15435537 - 15435577
Alignment:
Q  106 catttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  15435537 catttttgtttgtaacgactttgaatttatattgtatcgat 15435577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 33839159 - 33839091
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||| || ||  |||||| ||||||||||| ||| ||||  ||||||||||||||||||    
T  33839159 gatgttgtgagttttttcgcaaattcattatttttgttttcaacgacttcaaatttatattgtatcgat 33839091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 5754641 - 5754732
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaacgaat 168  Q
    |||| ||||||||||||  | |||||||| |||||||||||| | | ||||||||| |||| ||||||| |||| |||| ||||||| ||||    
T  5754641 gatgatgtgagtttgttcacatattcatcctttttgtttttagcgaatttgaatttgtattatatcgatgtattctatcaatttgaatgaat 5754732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 20607195 - 20607148
Alignment:
Q  99 tattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||| |||||| | ||||||||||| ||||||||||||    
T  20607195 tattcatcatttttatttttagcgactttgaatttgtattgtatcgat 20607148  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 11561449 - 11561363
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat-tattttatctatttgaa 163  Q
    |||||||| |||||||| ||  ||||||| ||||| |||||| ||||||||||||| ||| | |||||| || |||||| |||||||    
T  11561449 gatgttgtaagtttgttcgcagattcatcctttttatttttagcaactttgaatttgtatcgaatcgatatactttatcaatttgaa 11561363  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 20560913 - 20560827
Alignment:
Q  61 ttttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||||  | |||||||||||||||||  |  ||||||| |||||||||||| | | |||| |||| ||||||||||||    
T  20560913 ttttatactattaacatggatgttgtgagtttgttcacagattcatcctttttgtttttagcgaatttggatttgtattgtatcgat 20560827  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 25622814 - 25622773
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgttttta 119  Q
    ||||||||||||||||| || |||||||| ||||||||||||    
T  25622814 gatgttgtgagtttgttcgcatattcatcctttttgttttta 25622773  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 32711989 - 32711928
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattg 139  Q
    |||||||||| |||||| ||  |||||||   |||||||||||| |||||||||||||||||    
T  32711989 gatgttgtgaatttgtttgcaaattcatccactttgtttttaacgactttgaatttatattg 32711928  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 34471319 - 34471360
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgttttta 119  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  34471319 gatgttgtgagtttgttcacatattcatcatttttgttttta 34471360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 4739688 - 4739756
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  ||||||| |||||||||||| | | |||| |||| ||||||||||||    
T  4739688 gatgttgtgagtttgttcacagattcatcctttttgtttttagcgaatttggatttgtattgtatcgat 4739756  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 11798299 - 11798232
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||||||| ||  ||||||| ||||| |||||| | |||||||||||  |||||||||||    
T  11798299 gatgttgtgagtttgttcgcagattcatc-tttttatttttagcgactttgaatttgaattgtatcgat 11798232  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 12890879 - 12890811
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  ||||||| |||||||||||| | | |||| |||| ||||||||||||    
T  12890879 gatgttgtgagtttgttcacagattcatcctttttgtttttagcgaatttggatttgtattgtatcgat 12890811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 18089174 - 18089106
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  ||||||| |||||||||||| | | |||| |||| ||||||||||||    
T  18089174 gatgttgtgagtttgttcacagattcatcctttttgtttttagcgaatttggatttgtattgtatcgat 18089106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 29938631 - 29938699
Alignment:
Q  79 atgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgatt 147  Q
    ||||||||||||||||  | || ||||  ||| |||||||||||| ||| |||||||||||||| ||||    
T  29938631 atgttgtgagtttgttgacataatcattttttctgtttttaacaattttaaatttatattgtattgatt 29938699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 33012407 - 33012475
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  ||||||| |||||||||||| | | ||| ||||| ||||||||||||    
T  33012407 gatgttgtgagtttgttcacaaattcatcctttttgtttttagcgaatttaaatttgtattgtatcgat 33012475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 35333864 - 35333932
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||| ||||||||||||  |  ||||||| |||||||||||||| | |||| |||| ||||||||||||    
T  35333864 gatgatgtgagtttgttcacagattcatcttttttgtttttaacgaatttggatttgtattgtatcgat 35333932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 36868367 - 36868435
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    ||||||||||||||||   |  |||||||||||||||||||| | | ||| |||||||||| |||||||    
T  36868367 gatgttgtgagtttgtacacagattcatcatttttgtttttagcgaatttaaatttatattatatcgat 36868435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 44589202 - 44589322
Alignment:
Q  50 atattttatcattttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcga-tt 147  Q
    ||||||| || |||||| |||||||  | |||| ||||||||||||  |  ||| ||| |||||||||||| | | ||||||||| ||||||||||| ||    
T  44589202 atattttgtcgttttatgctattaacatggatgatgtgagtttgttcacaaatttatcctttttgtttttagcgaatttgaatttgtattgtatcgattt 44589301  T
Q  148 attttatctatttgaacgaat 168  Q
    ||| |||| ||||||| ||||    
T  44589302 attctatcaatttgaatgaat 44589322  T

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Target: scaffold0294 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 5962 - 5892
Alignment:
Q  76 tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||||  |  |||||||  ||||||||||| | | ||||||||||||||||||||||    
T  5962 tagatgttgtgagtttgttcacagattcatccattttgtttttagcgaatttgaatttatattgtatcgat 5892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 3829 - 3761
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  ||||||| |||||||||||| | | |||| |||| ||||||||||||    
T  3829 gatgttgtgagtttgttcacagattcatcctttttgtttttaccgaatttggatttgtattgtatcgat 3761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 6917 - 6824
Alignment:
Q  54 tttatcattttatactattaat-tagatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||| |||||||| |||||||  | |||||||||||||||||  |  ||||||| |||||||||||| | | ||||||||| ||||||||||||    
T  6917 tttaccattttatgctattaacatggatgttgtgagtttgttcacagattcatcctttttgtttttagcgaatttgaatttgtattgtatcgat 6824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 4152 - 4220
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||| || ||  |||||||||||||  ||||||  ||||| ||||||||||| ||||||    
T  4152 gatgttgtgagtttattcgcagattcatcattttttattttaaagactttaaatttatattgcatcgat 4220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 35434 - 35502
Alignment:
Q  78 gatgttgtgagtttgttagcgtattcatcatttttgtttttaacaactttgaatttatattgtatcgat 146  Q
    |||||||||||||||||  |  ||| ||| |||||||||||| ||| |||| |||| ||||||||||||    
T  35434 gatgttgtgagtttgttcacaaatttatcctttttgtttttagcaaatttggatttgtattgtatcgat 35502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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