View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1853_low_5 (Length: 386)
Name: NF1853_low_5
Description: NF1853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1853_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 42119604 - 42119968
Alignment:
| Q |
13 |
aatattgtgtttattttaccatgaaaaacaatt--gtgtatgtatatcctcaaacctcttttttacgcaagcattctcaatcaaattcaataataatgat |
110 |
Q |
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| T |
42119604 |
aatattgtgtttattttaccatgaaaaacaattatgtgtatgtatatcctcaaacctctattttacgcaagcattctcaatcaaattcaataataatgat |
42119703 |
T |
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| Q |
111 |
gtgtgta-------tatccatctgtttgcaatttcaatcttatgattgtataaaaaacttgagtcttacattccnnnnnnnnnnnntccaatcttatatg |
203 |
Q |
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| T |
42119704 |
gtgtgtagtgtgtgtatccatctgtttgcaatttcaatcttatgattgtataaaaaacttgagtcttacattccaaaaaataaaaatccaatcttatatg |
42119803 |
T |
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| Q |
204 |
atgaatgtgaacactttaaagtaaatagaggttcttaattnnnnnnnnnnnnnnnnnnggtgatagctgttggaagttcctagcgtgaaagacacggttg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42119804 |
atgaatgtgaacactttaaagtaaatagaggttcttaattaaaaaaaaaaaaaa----ggtgatagctgttggaagttcctagcgtgaaagacacggttg |
42119899 |
T |
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| Q |
304 |
gaatttggaataaagataaagataaactttatttttcattcgtttttgcccttttagtttggccctacg |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42119900 |
gaatttggaataaagataaagataaactttatttttcattcgtttttgcccttttagtttggccctacg |
42119968 |
T |
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