View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1853_low_6 (Length: 376)
Name: NF1853_low_6
Description: NF1853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1853_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 7 - 359
Target Start/End: Complemental strand, 37339390 - 37339038
Alignment:
| Q |
7 |
gagagaagaatggttgagtaataaaagcatgatgagtgtcctcctcatctctttgactaattgatgtcagaaagttgccaaggataatatactatgtttg |
106 |
Q |
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| T |
37339390 |
gagagaagaatggttgagtaataaaagcatgatgagtgtcctcctcatctctttgactaattgatgtcaggaagttgccaaggataatatactatgtttg |
37339291 |
T |
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| Q |
107 |
atacttaaaactttaaatcatatccgtaacaaatgaaaatgagtaattgacaaaataaaagaaatgagagagacctgaagttgctgattcatgccaggaa |
206 |
Q |
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| T |
37339290 |
atacttaaaactttaaatcatatccgtaacaaatgaaaatgagtaattgacaaaataaaagaaatgagagagacctgaagttgctgattcatgccaggaa |
37339191 |
T |
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| Q |
207 |
ttgtataataatttgaagaacagcaattgtcatccatgctgtccagtttatcactaagcaggttcaggtgaaagaaattgtcatgttcccttgatgtgtt |
306 |
Q |
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| T |
37339190 |
ttgtataataatttgaagaacagcaattgtcatccatgctgtccagtttatcactaagcaggttcaggtgaaagaaattgtcatgttcccttgatgtgtt |
37339091 |
T |
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| Q |
307 |
acatgcaatgttgttaaatctatcttccgaaatagattcaaaatcatcagaac |
359 |
Q |
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| T |
37339090 |
gcatgccatgttgttaaatctatcttccgaaatagattcaaaatcatcagaac |
37339038 |
T |
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