View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1853_low_7 (Length: 374)
Name: NF1853_low_7
Description: NF1853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1853_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 14 - 359
Target Start/End: Original strand, 1328295 - 1328640
Alignment:
| Q |
14 |
aagcataggagcaaaaataaagtatgcctccaaactcattaagaaaagcctttggggcagtaaaggatcagacaagcataggactagcaatggtgggaag |
113 |
Q |
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| T |
1328295 |
aagcataggagcaaaaataaagtatgcctccaaactcattaagaaaagcctttggggcagtaaaggatcagacaagcataggactagcaatggtgggaag |
1328394 |
T |
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| Q |
114 |
cagcacctcacttgctgaccttgatgtagctattgtgaaagcgactaggcacgatgaatatccggctgaagagaaatatatacgggagattctgagttta |
213 |
Q |
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| T |
1328395 |
cagcacctcacttgctgaccttgatgtagctattgtgaaagcgactaggcacgatgaatatccggctgaagagaaatatatacgggagattctgagttta |
1328494 |
T |
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| Q |
214 |
acatgttactctcgcgcattcattagtgcttgtgttaataccctctcgaggcgtctcagcaagactaaaaattggacagtggctttgaaaactcttattt |
313 |
Q |
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| T |
1328495 |
acatgttactctcgcgcattcattagtgcttgtgttaataccctctcgaggcgtctcagcaagactaaaaattggacagtggctttgaaaactcttattt |
1328594 |
T |
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| Q |
314 |
tgattcaaaggcttctagcagaaggtgaccctgcttatgagcaaga |
359 |
Q |
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| T |
1328595 |
tgattcaaaggcttctagaagaaggtgaccctgcttatgagcaaga |
1328640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 324
Target Start/End: Original strand, 1923654 - 1923928
Alignment:
| Q |
50 |
cattaagaaaagcctttggggcagtaaaggatcagacaagcataggactagcaatggtgggaagcagcacctcacttgctgaccttgatgtagctattgt |
149 |
Q |
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| T |
1923654 |
cattaagaagagccattggagcagtgaaagatcaaacaagcataggcatagcaaaagttggaagcagtgcctcaataggtgatcttcaagtagccattgt |
1923753 |
T |
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| Q |
150 |
gaaagcgactaggcacgatgaatatccggctgaagagaaatatatacgggagattctgagtttaacatgttactctcgcgcattcattagtgcttgtgtt |
249 |
Q |
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| T |
1923754 |
taaagcaacaaaacatgatgaaaatccagctgaagaaagacacattagagagattctaagcttaacatgttactcacgagcattcataagttcttgtgtg |
1923853 |
T |
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| Q |
250 |
aataccctctcgaggcgtctcagcaagactaaaaattggacagtggctttgaaaactcttattttgattcaaagg |
324 |
Q |
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| T |
1923854 |
aacacactctctaaacgtttgatcaagacaagcagttggacagttgctttaaaaacacttgttttgattcaaagg |
1923928 |
T |
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