View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1853_low_8 (Length: 361)
Name: NF1853_low_8
Description: NF1853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1853_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 37808807 - 37808577
Alignment:
| Q |
19 |
gagacgtgtgttaccgttatttgtaactctcgagtgagagtattctagagtagtacacaattttggaatgagttatataatcattaaatgtaatgttact |
118 |
Q |
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| T |
37808807 |
gagacgtgtgttaccgttatttgtaactctcgagtgagagtattctagagtagtacacaatttcggaatgagttatataatcattaaatgtaatgttact |
37808708 |
T |
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| Q |
119 |
tgagatggagaatacattatattgaaatgtttttgtggatgtaaggaaaaggtgtc-gacaatggaggagtcaggattctaacataggtgttcaaacttt |
217 |
Q |
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| T |
37808707 |
tgagatggagaatacattatattgaaatgtttttgtggatgtaaggaaaaggtgtctgacaatggcggagtcaggattctaacataggtgttcaaacttt |
37808608 |
T |
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| Q |
218 |
tgagttcttgagctttttgggttaatgatgc |
248 |
Q |
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| T |
37808607 |
tgagttcttgagctttttgggttaatgatgc |
37808577 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 19619045 - 19619078
Alignment:
| Q |
208 |
ttcaaacttttgagttcttgagctttttgggtta |
241 |
Q |
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| T |
19619045 |
ttcaaacttttgagttcttgagcttcttgggtta |
19619078 |
T |
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