View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18540_high_1 (Length: 531)
Name: NF18540_high_1
Description: NF18540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18540_high_1 |
 | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
| [»] scaffold0640 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 13 - 522
Target Start/End: Original strand, 41199700 - 41200208
Alignment:
| Q |
13 |
aacttctgccttttttctatttgtttgaactaaaaatgcttgatctaaaaatataaatgtaaattatctttgcttcgcgaggtaaacacataagctcttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41199700 |
aacttctgccttttttctatttgtttgaactaaaaatgcttgatctaaaaatataaatgtaaattatctttgcttcgcgaggtaaacacataagctcttc |
41199799 |
T |
|
| Q |
113 |
tctcttgctactgtagtaatcagcaatcggtgagaaaatggctgagagactatttaagaaaagtggaagctagaaatgaactttgttttaggagtcttca |
212 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41199800 |
tctcttgctactgtagtaatcagtaatcggtgagaaaatggctgagagactatttaagaaaagtggaagctagaaatgaactt-gttttaggagtcttca |
41199898 |
T |
|
| Q |
213 |
caatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
41199899 |
caatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatatgttttgcgtaataaatgcatatcacacgattca |
41199998 |
T |
|
| Q |
313 |
ttctttcttatcagtatttgggactgccttgctgcaaaacaaaaggtaggaaggttgacagaattgatagttttcagcaatatggacagttagttgtctt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
41199999 |
ttctttcttatcagtatttgggactgccttgctgcaaaacaaaaggtaggaaggttgacaaaatttatagttttcagcaatatggacatttagttgtctt |
41200098 |
T |
|
| Q |
413 |
gaaactagatgcaatttgcaggnnnnnnntatttagttgaagaagcctaagttagaatttggaagtggatggacctacttgttttcaaaggacatcaatt |
512 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
41200099 |
gaaactagatgcaatttgcaggaaaaaaatatttagttgaagaagcctaagttagaatttggaagtggaaggacctacttattttcaaaggacatcaatt |
41200198 |
T |
|
| Q |
513 |
ttagaataat |
522 |
Q |
| |
|
|||| ||||| |
|
|
| T |
41200199 |
ttaggataat |
41200208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 36 - 522
Target Start/End: Original strand, 1041411 - 1041887
Alignment:
| Q |
36 |
tttgaactaaaaatgcttgatctaaaaatataaatgtaaattatctttgcttcgcgaggtaaacacataagctcttctctcttgctactgtagtaatcag |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1041411 |
tttgaactaaaaatgcttgatctaaaaatataaatgtaaattatctttgcttcgcgaggtaaacacataagctcttctctcttgctactgtagtaatcag |
1041510 |
T |
|
| Q |
136 |
caatcggtgagaaaatggctgagagactatttaagaaaagtggaagctagaaatgaactttgttttaggagtcttcacaatgtgtaagttggaacaggag |
235 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1041511 |
taatcggtgagaaagtggctgagagactatttaagaaaagtggaagctagaaatgaactt-gttttagcagtcttcacaatgtgtaagttggaacaggag |
1041609 |
T |
|
| Q |
236 |
gatactactaatctgtttttgaatgtcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattcattctttcttatcagtatttggga |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
1041610 |
gatactactaatctgtttttgaatgtcagttagatttctcatcagttttgcgtaataaatgcatatcacacgattcattctttcgtatcagtatttggga |
1041709 |
T |
|
| Q |
336 |
ctgccttgctgcaaaacaaaaggtaggaaggttgacagaattgatagttttcagca----atatggacagttagttgtcttgaaactagatgcaatttgc |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1041710 |
ctgccttgctgcaaaacaaaaggtaggaaggttgacagaatttatagttttcggcaatatatatggacatttagttgtcttgaaactagatgcaatttgc |
1041809 |
T |
|
| Q |
432 |
aggnnnnnnntatttagttgaagaagcctaagttagaatttggaagtggatggacctacttgttttcaaaggacatcaattttagaataat |
522 |
Q |
| |
|
||| ||||||||||| || | ||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1041810 |
aggaaaaaaatatttagttga-----------tt--taattggaagtggatgaacctacttgttttcaaaggacatcaattttaggataat |
1041887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 195 - 522
Target Start/End: Original strand, 41192634 - 41192952
Alignment:
| Q |
195 |
ttgttttaggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttttgcgtaataaa |
294 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41192634 |
ttgttttagcagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatcagttttgcgtaataaa |
41192733 |
T |
|
| Q |
295 |
tgcatatcacaccattcattctttcttatcagtatttgggactgccttgctgcaaaacaaaaggtaggaaggttgacagaattgatagttttcagca--- |
391 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
41192734 |
tgcatatcacacgattcattctttcgtatcagtatttgggactgccttgctgcaaaacaaaaggtaggaaggttgacagaatttatagttttcggcaata |
41192833 |
T |
|
| Q |
392 |
-atatggacagttagttgtcttgaaactagatgcaatttgcaggnnnnnnntatttagttgaagaagcctaagttagaatttggaagtggatggacctac |
490 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || | ||||||||||||| |||||| |
|
|
| T |
41192834 |
tatatggacatttagttgtcttgaaactagatgcaatttgcaggaaaaaaatatttagttga-----------tt--taattggaagtggatgaacctac |
41192920 |
T |
|
| Q |
491 |
ttgttttcaaaggacatcaattttagaataat |
522 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
41192921 |
ttgttttcaaaggacatcaattttaggataat |
41192952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 261 - 522
Target Start/End: Original strand, 41407385 - 41407641
Alignment:
| Q |
261 |
tcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattcattctttcttatcagtatttgggactgccttgctgcaaaacaaaaggta |
360 |
Q |
| |
|
||||||||||||||||| |||||||||||| || ||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
41407385 |
tcagttagatttctcattagttttgcgtaattaaagcataacacactattcattctttctaatcagtatttggaactgccttgctgcaaaacaaaaagta |
41407484 |
T |
|
| Q |
361 |
ggaaggttgacagaattgatagttttcagcaatatggac-agttagttgtcttgaaactagatgcaatttgcaggnnnnnnntatttagttgaagaagcc |
459 |
Q |
| |
|
||| ||||||||| || | | || | ||||||||| | ||||||||||| ||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
41407485 |
tgaaagttgacagatttta----tctcggtaatatggacaatttagttgtcttaaaactagatgcaatttgcaggaaaaaaaaa--tagttgaagaagcc |
41407578 |
T |
|
| Q |
460 |
taagttagaatttggaagtggatggacctacttgttttcaaaggacatcaattttagaataat |
522 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |
|
|
| T |
41407579 |
aaagtctgaatttggaagtggatggacctacatgttttcaaaggacatccattttaggataat |
41407641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 522
Target Start/End: Original strand, 33322978 - 33323478
Alignment:
| Q |
13 |
aacttctgccttttttctatttgttt-gaactaaaaatgcttgatctaaaaatataaatgtaaattatctttgcttcgcgaggtaaacacataagctctt |
111 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33322978 |
aacttctgccttttttctatttgttttgaactaaaaatgcttgatctaaaaatataaatgtaaattatctttgcttcgcgaggtaaacacataagctctt |
33323077 |
T |
|
| Q |
112 |
ctctcttgctactgtagtaatcagcaatcggtgagaaaatggctgagagactatttaagaaaagtggaagctagaaatgaactttgttttaggagtcttc |
211 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
33323078 |
ctctcttgctactgtagtaatcagtaatcggtgagaaagtggctgagagactatttaagaaaagtggaagctagaaatgaactt-gttttagcagtcttc |
33323176 |
T |
|
| Q |
212 |
acaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
33323177 |
acaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatcagttttgcgtaataaatgcatatcacacgattc |
33323276 |
T |
|
| Q |
312 |
attctttcttatcagtatttgggactgccttgctgcaaaacaaaaggtaggaaggttgacagaattgatagttttcagca----atatggacagttagtt |
407 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||| |
|
|
| T |
33323277 |
attctttcgtatcagtatttgggactgccttgctgcaaaacaaaaggtaggaaggttgacagaatttatagttttcggcaatatatatggacatttagtt |
33323376 |
T |
|
| Q |
408 |
gtcttgaaactagatgcaatttgcaggnnnnnnntatttagttgaagaagcctaagttagaatttggaagtggatggacctacttgttttcaaaggacat |
507 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| || | ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33323377 |
gtcttgaaactagatgcaatttgcaggaaaaaaatatttagttga-----------tt--taattggaagtggatgaacctacttgttttcaaaggacat |
33323463 |
T |
|
| Q |
508 |
caattttagaataat |
522 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
33323464 |
caattttaggataat |
33323478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 261 - 522
Target Start/End: Complemental strand, 24113 - 23857
Alignment:
| Q |
261 |
tcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattcattctttcttatcagtatttgggactgccttgctgcaaaacaaaaggta |
360 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || ||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
24113 |
tcagttagatttctcatcagttttgcgtaattaaagcataacacactattcattctttctaatcagtatttggaactgccttgctgcaaaacaaaaagta |
24014 |
T |
|
| Q |
361 |
ggaaggttgacagaattgatagttttcagcaatatggac-agttagttgtcttgaaactagatgcaatttgcaggnnnnnnntatttagttgaagaagcc |
459 |
Q |
| |
|
||| ||||||||| || | | || | ||||||||| | ||||||||||| ||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
24013 |
tgaaagttgacagatttta----tctcggtaatatggacaatttagttgtcttaaaactagatgcaatttgcaggaaaaaaaaa--tagttgaagaagcc |
23920 |
T |
|
| Q |
460 |
taagttagaatttggaagtggatggacctacttgttttcaaaggacatcaattttagaataat |
522 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |
|
|
| T |
23919 |
aaagtctgaatttggaagtggatggacctacatgttttcaaaggacatccattttaggataat |
23857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 261 - 434
Target Start/End: Complemental strand, 3549 - 3379
Alignment:
| Q |
261 |
tcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattcattctttcttatcagtatttgggactgccttgctgcaaaacaaaaggta |
360 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || ||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
3549 |
tcagttagatttctcatcagttttgcgtaattaaagcataacacactattcattctttctaatcagtatttggaactgccttgctgcaaaacaaaaagta |
3450 |
T |
|
| Q |
361 |
ggaaggttgacagaattgatagttttcagcaatatggac-agttagttgtcttgaaactagatgcaatttgcagg |
434 |
Q |
| |
|
||| ||||||||| || | | || | ||||||||| | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
3449 |
tgaaagttgacagatttta----tctcggtaatatggacaatttagttgtcttaaaactagatgcaatttgcagg |
3379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 522
Target Start/End: Complemental strand, 3342 - 3301
Alignment:
| Q |
481 |
atggacctacttgttttcaaaggacatcaattttagaataat |
522 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| ||||| |
|
|
| T |
3342 |
atggacctacatgttttcaaaggacatccattttaggataat |
3301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 352
Target Start/End: Complemental strand, 16700496 - 16700352
Alignment:
| Q |
203 |
ggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttttgcgtaataaatgcatatc |
302 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||| ||||| | ||| || |||||| |||| ||||||||| |||||||| ||||||| ||||||||||||| | |
|
|
| T |
16700496 |
ggagtctt-acaatgtgtcagttgaaacagcaggatgcgactgatatgttttcgaatatcagttagacttctcatcagttttgcataataaatgcatacc |
16700398 |
T |
|
| Q |
303 |
acaccattcattctttcttatcagtatttgggactgccttgctgcaaaac |
352 |
Q |
| |
|
| | | |||||||||||||| | |||||| || ||||||||||||| |
|
|
| T |
16700397 |
ata----ttattctttcttatcattttttgggtttgacttgctgcaaaac |
16700352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 431
Target Start/End: Original strand, 12001799 - 12001938
Alignment:
| Q |
292 |
aaatgcatatcacaccattcattctttcttatcagtatttgggactgccttgctgcaaaacaaaaggtaggaaggttgacagaattgatagttttcagca |
391 |
Q |
| |
|
||||||||||||| | ||| |||||| | |||||| ||||| |||||||||||||||| ||||| || | | |||||||| || || |||| ||||| |
|
|
| T |
12001799 |
aaatgcatatcactctattatttctttgt-atcagtttttggaactgccttgctgcaaactgaaaggaagaaggtttgacagattttatggtttccagca |
12001897 |
T |
|
| Q |
392 |
atatggacagt-tagttgtcttgaaactagatgcaatttgc |
431 |
Q |
| |
|
||||| ||| | | | || || ||||||||||||||||||| |
|
|
| T |
12001898 |
atatgaacaatctggctgactagaaactagatgcaatttgc |
12001938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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