View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18540_high_17 (Length: 203)

Name: NF18540_high_17
Description: NF18540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18540_high_17
NF18540_high_17
[»] chr5 (5 HSPs)
chr5 (20-190)||(1501353-1501523)
chr5 (75-190)||(25955944-25956059)
chr5 (76-190)||(38280257-38280371)
chr5 (75-190)||(42250116-42250231)
chr5 (74-183)||(7886354-7886463)
[»] chr7 (11 HSPs)
chr7 (75-190)||(496683-496798)
chr7 (74-190)||(11765706-11765822)
chr7 (73-190)||(7527248-7527365)
chr7 (74-190)||(2286457-2286573)
chr7 (75-190)||(25185917-25186032)
chr7 (75-190)||(48057683-48057798)
chr7 (75-190)||(42535198-42535313)
chr7 (82-190)||(23844642-23844750)
chr7 (74-190)||(31427244-31427362)
chr7 (74-130)||(4649481-4649537)
chr7 (75-190)||(40855135-40855251)
[»] chr4 (3 HSPs)
chr4 (75-190)||(52055132-52055247)
chr4 (75-190)||(1158239-1158354)
chr4 (96-183)||(49866671-49866758)
[»] chr3 (6 HSPs)
chr3 (74-190)||(49786392-49786508)
chr3 (69-190)||(47940820-47940941)
chr3 (75-190)||(8152977-8153094)
chr3 (75-190)||(8436880-8436995)
chr3 (75-190)||(29836754-29836868)
chr3 (81-175)||(48778972-48779066)
[»] chr2 (2 HSPs)
chr2 (75-190)||(13922185-13922300)
chr2 (78-190)||(11828960-11829072)
[»] chr8 (2 HSPs)
chr8 (80-190)||(3780343-3780453)
chr8 (75-190)||(4076928-4077043)
[»] chr1 (5 HSPs)
chr1 (75-190)||(20186825-20186940)
chr1 (75-190)||(30339636-30339751)
chr1 (75-190)||(51787272-51787387)
chr1 (75-175)||(43740406-43740506)
chr1 (97-190)||(9672956-9673046)
[»] chr6 (1 HSPs)
chr6 (75-190)||(33594503-33594618)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 1501523 - 1501353
Alignment:
Q  20 taataaagctccctcttcaggtgcaaaagatttcgttactgtggttcataattttgagtggtgatacatgcacattcataggtggcatacacacttaaac 119  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||    
T  1501523 taataaagctccctcttcaggtgcaaaagatttcattactgtggttcataattttgagtggtgatacatgcagatccataggtgacatacacacttaaac 1501424  T
Q  120 ctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctctttcattcatctc 190  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  1501423 ctccacataaacatatgacatgtagcctagaccccatatacactttgtctctcttctctttcatccatctc 1501353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 25956059 - 25955944
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| |||||||| ||||| |||||| ||||||||||||||||||    
T  25956059 gagtggtgatacatgcacactcataggtggcatacacatttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctctt 25955960  T
Q  175 ctctttcattcatctc 190  Q
    |  |||||| ||||||    
T  25955959 ccttttcatccatctc 25955944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 38280371 - 38280257
Alignment:
Q  76 agtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttc 175  Q
    |||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||| ||  |||| |||||| |||||||||||||||||||    
T  38280371 agtggtgatacatgtacatccataggtggtatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctcttc 38280272  T
Q  176 tctttcattcatctc 190  Q
    |||||||| ||||||    
T  38280271 tctttcatccatctc 38280257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 42250116 - 42250231
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    |||||||||||||||||||  ||||  || |||| ||||||||||||||||| |||||| |||||||| || || |||||| ||||||||||||||||||    
T  42250116 gagtggtgatacatgcacacccataaatgacatagacacttaaacctccacacaaacatgtgacatgtggcttagaccccacaaacactttgtctctctt 42250215  T
Q  175 ctctttcattcatctc 190  Q
    |  |||||| ||||||    
T  42250216 ccttttcatccatctc 42250231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 7886354 - 7886463
Alignment:
Q  74 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctct 173  Q
    ||||||||||| |||||| | | ||||||| |||||||||||||||||||||| |||||| |||||||| ||||||| |||| | | | |||||||||||    
T  7886354 tgagtggtgattcatgcatacttataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctaaatcccacatatattttgtctctct 7886453  T
Q  174 tctctttcat 183  Q
    || |||||||    
T  7886454 tccctttcat 7886463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 4e-40; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 496683 - 496798
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||| ||||||||||||||||||    
T  496683 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatatgacacgtgtcctagaccccacaaacactttgtctctctt 496782  T
Q  175 ctctttcattcatctc 190  Q
    ||||||||| ||||||    
T  496783 ctctttcatccatctc 496798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 11765706 - 11765822
Alignment:
Q  74 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctct 173  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| ||  |||  |||||| |||||||||||||||||    
T  11765706 tgagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtccttgaccccacaaacactttgtctctct 11765805  T
Q  174 tctctttcattcatctc 190  Q
    |||||||||| ||||||    
T  11765806 tctctttcatccatctc 11765822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 7527365 - 7527248
Alignment:
Q  73 ttgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctc 172  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| |||||||| ||||| || |||||||||||||||||||     
T  7527365 ttgaggggtgatacatgcatattcattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagactccataaacactttgtctctt 7527266  T
Q  173 ttctctttcattcatctc 190  Q
    || | |||||| ||||||    
T  7527265 ttttttttcatccatctc 7527248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 2286457 - 2286573
Alignment:
Q  74 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctct 173  Q
    ||||| ||||||||||||||   || ||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||| |||||||||||||||||    
T  2286457 tgagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctct 2286556  T
Q  174 tctctttcattcatctc 190  Q
    ||  |||||| ||||||    
T  2286557 tccttttcatccatctc 2286573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 25186032 - 25185917
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    |||||||||| |||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||| ||||| |||||| ||| ||||| ||||||||    
T  25186032 gagtggtgatgcatgcacactcataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaatactttatctctctt 25185933  T
Q  175 ctctttcattcatctc 190  Q
    |  |||||| ||||||    
T  25185932 ccttttcatccatctc 25185917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 48057798 - 48057683
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    ||||||||||||||| |||  ||||||||||||||| | |||||| ||||||||||||| ||||| ||  |||| |||||| ||||||||||||||||||    
T  48057798 gagtggtgatacatgtacacccataggtggcatacatatttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 48057699  T
Q  175 ctctttcattcatctc 190  Q
    ||||||||| ||||||    
T  48057698 ctctttcatccatctc 48057683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 42535313 - 42535198
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    ||||| ||||| ||| ||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||  | || | |||| ||||||||||||||||||    
T  42535313 gagtgatgatatatgtacactcataggtgacatacacacttaaacctccacataaacatgtgacacgtgtcttatatcccacaaacactttgtctctctt 42535214  T
Q  175 ctctttcattcatctc 190  Q
    ||||||||| ||||||    
T  42535213 ctctttcatccatctc 42535198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 23844642 - 23844750
Alignment:
Q  82 gatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctctttc 181  Q
    ||||||||||||| |||||||  |||||||||| ||| |||||||||||||| ||||||||  |||| ||| || |||||||||||||||||||  ||||    
T  23844642 gatacatgcacatccataggtaacatacacactcaaatctccacataaacatgtgacatgtgccctagacctcacaaacactttgtctctcttccttttc 23844741  T
Q  182 attcatctc 190  Q
    || ||||||    
T  23844742 atccatctc 23844750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 31427362 - 31427244
Alignment:
Q  74 tgagtggtgatacatgcacattcataggtg--gcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctct 171  Q
    ||||||||||||||||||||| ||||||||  ||||||| | |||||||||| |||||| || |||||||| |  || || ||| |||||||||||||||    
T  31427362 tgagtggtgatacatgcacatccataggtgtggcatacataattaaacctccgcataaatatgtgacatgtggtttagactccacaaacactttgtctct 31427263  T
Q  172 cttctctttcattcatctc 190  Q
    |||| || |||| ||||||    
T  31427262 cttccctctcatccatctc 31427244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 4649537 - 4649481
Alignment:
Q  74 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaa 130  Q
    |||||||||||| ||||| ||||||| |||||||||||| ||||| |||||||||||    
T  4649537 tgagtggtgatagatgcaaattcataagtggcatacacatttaaaactccacataaa 4649481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 40855251 - 40855135
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagc-ctaaaccccataaacactttgtctctct 173  Q
    ||||| |||| |||||| || |||| |||| ||| ||||||||||||| ||| |||||| |||| ||| |  ||| ||| || ||||||||||||||| |    
T  40855251 gagtgatgatgcatgcatatccatatgtggtatatacacttaaacctctacacaaacatgtgacctgtgggtctagacctcacaaacactttgtctcttt 40855152  T
Q  174 tctctttcattcatctc 190  Q
    || ||||||||||||||    
T  40855151 tccctttcattcatctc 40855135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 52055247 - 52055132
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||| |||||| ||||||||||||||||||    
T  52055247 gagtggtgatacatgcacattcataggtggcatacacacttaaacctctacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctctt 52055148  T
Q  175 ctctttcattcatctc 190  Q
    |  |||||| ||||||    
T  52055147 ccttttcatccatctc 52055132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 1158354 - 1158239
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    ||||| ||||||||||||||  ||||  ||| |||||||||||||||||||| |||||| |||||||| ||||| |||| | ||||| ||||||||||||    
T  1158354 gagtgatgatacatgcacatcgatagaaggcgtacacacttaaacctccacacaaacatgtgacatgtggcctagaccctacaaacattttgtctctctt 1158255  T
Q  175 ctctttcattcatctc 190  Q
    | ||||||||||||||    
T  1158254 ccctttcattcatctc 1158239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 49866671 - 49866758
Alignment:
Q  96 cataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctctttcat 183  Q
    ||||||||| |||||| ||||||||| |||| ||| || ||||||||  | || ||| ||||||||||||||||||||||||||||||    
T  49866671 cataggtggtatacacgcttaaaccttcacacaaatatgtgacatgtgacttagaccacataaacactttgtctctcttctctttcat 49866758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 6e-36; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 49786392 - 49786508
Alignment:
Q  74 tgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctct 173  Q
    |||| ||||||||||| |||  |||||||||||||||||||||||||||||||||||||| ||||| ||  |||| |||||| |||||||||||||||||    
T  49786392 tgagcggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctct 49786491  T
Q  174 tctctttcattcatctc 190  Q
    |||||||||||||||||    
T  49786492 tctctttcattcatctc 49786508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 47940820 - 47940941
Alignment:
Q  69 aattttgagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtc 168  Q
    |||| ||||| ||||||||||||||   || ||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||| ||||||||||||    
T  47940820 aattatgagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtc 47940919  T
Q  169 tctcttctctttcattcatctc 190  Q
    |||||||  |||||| ||||||    
T  47940920 tctcttccttttcatccatctc 47940941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 8152977 - 8153094
Alignment:
Q  75 gagtggtgatacat--gcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctc 172  Q
    ||||||||||||||  |||||   ||||||||||||||||| ||||||||||||||||||| |||||||| ||||| || ||| ||||||||||||||||    
T  8152977 gagtggtgatacatatgcacacctataggtggcatacacacctaaacctccacataaacatgtgacatgtggcctagactccacaaacactttgtctctc 8153076  T
Q  173 ttctctttcattcatctc 190  Q
    |||||||| || ||||||    
T  8153077 ttctcttttatccatctc 8153094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 8436995 - 8436880
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    ||||||||||| ||| |||  ||||||||||||||||| ||||||||| ||||||| |||||||| ||  | || |||||| ||||||||||||||||||    
T  8436995 gagtggtgatatatgtacacccataggtggcatacacatttaaacctctacataaatatatgacacgtgtcttagaccccacaaacactttgtctctctt 8436896  T
Q  175 ctctttcattcatctc 190  Q
    ||||||||| ||||||    
T  8436895 ctctttcatccatctc 8436880  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 29836868 - 29836754
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || | |||| |  |||| |||||| ||| ||||||||||||||    
T  29836868 gagtggtgatacatgcacactcataggtggcatacacacttaaacctccacacaaatatgtaacatatgacctacaccccacaaa-actttgtctctctt 29836770  T
Q  175 ctctttcattcatctc 190  Q
    |||| |||||| ||||    
T  29836769 ctctctcattcgtctc 29836754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 48779066 - 48778972
Alignment:
Q  81 tgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttc 175  Q
    |||||||||||||   ||||||||||||| || |||||| |||||||||| || |||||||| | ||| || ||||||||||||| |||||||||    
T  48779066 tgatacatgcacacctataggtggcatactcatttaaacatccacataaatatgtgacatgtggtctagactccataaacactttatctctcttc 48778972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 13922185 - 13922300
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| ||||| ||  |||| |||||| ||||||||||||||||||    
T  13922185 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacgtaaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 13922284  T
Q  175 ctctttcattcatctc 190  Q
    ||||||||| ||||||    
T  13922285 ctctttcatccatctc 13922300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 78 - 190
Target Start/End: Original strand, 11828960 - 11829072
Alignment:
Q  78 tggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctc 177  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||  |||| |||||| |||||||||| |||||| |||    
T  11828960 tggtgagacatgcacactcataggtggcatacacacttaaacctccacataaatatgtgacatgtgtcctagaccccacaaacactttgcctctctcctc 11829059  T
Q  178 tttcattcatctc 190  Q
    |||||| ||||||    
T  11829060 tttcatccatctc 11829072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 9e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 80 - 190
Target Start/End: Complemental strand, 3780453 - 3780343
Alignment:
Q  80 gtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctctt 179  Q
    |||||||||| |||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||||| |||    
T  3780453 gtgatacatgtacatccataggtggcatacacactcaaacctccacacaaacatgtgacatgtagcctaaacccgagaaacactttgtctctcttccctt 3780354  T
Q  180 tcattcatctc 190  Q
    |||| ||||||    
T  3780353 tcatccatctc 3780343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 4077043 - 4076928
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    ||||| ||||||||||| |  ||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||||| ||||||||||||    
T  4077043 gagtgatgatacatgcatacccataggtggcatacacacttaaacctccacacaaacatgtgacatgtagcctagaccccacaaacaatttgtctctctt 4076944  T
Q  175 ctctttcattcatctc 190  Q
    |  |||||| ||||||    
T  4076943 ccttttcatccatctc 4076928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 20186940 - 20186825
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    ||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||| ||||| ||  |||| | |||| ||||||||||||||||||    
T  20186940 gagtggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagatcccacaaacactttgtctctctt 20186841  T
Q  175 ctctttcattcatctc 190  Q
    ||||||||| ||||||    
T  20186840 ctctttcatccatctc 20186825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 30339636 - 30339751
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||||| |||||||||| ||||| ||  |||| |||||| ||||||||||||||||||    
T  30339636 gagtggtgatacatgtacacccataggtggcatacacacttaaacctctacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctctt 30339735  T
Q  175 ctctttcattcatctc 190  Q
    ||||||||| ||||||    
T  30339736 ctctttcatccatctc 30339751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 51787272 - 51787387
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||| ||   ||| |||||| ||||||||||||||||||    
T  51787272 gagtggtgatacatgtacatccataggtggcatacacacttaaaccttcacataaacatgtgacacgtgctctagaccccacaaacactttgtctctctt 51787371  T
Q  175 ctctttcattcatctc 190  Q
    ||||||||| ||||||    
T  51787372 ctctttcatgcatctc 51787387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 43740506 - 43740406
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    |||||||||| |||| |||| ||||| |  ||| |||||||||||||||||| |||||| ||| |||| ||||||||| || ||||||||||||||||||    
T  43740506 gagtggtgatccatgaacatccatagatcacatgcacacttaaacctccacacaaacatgtgatatgtggcctaaacctcacaaacactttgtctctctt 43740407  T
Q  175 c 175  Q
    |    
T  43740406 c 43740406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 9673046 - 9672956
Alignment:
Q  97 ataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctcttctctttcattcatctc 190  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||  |||| |  ||| ||||||  ||||||||||||||||||| ||||||    
T  9673046 ataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctaga-tccacaaacac--tgtctctcttctctttcatccatctc 9672956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 33594618 - 33594503
Alignment:
Q  75 gagtggtgatacatgcacattcataggtggcatacacacttaaacctccacataaacatatgacatgtagcctaaaccccataaacactttgtctctctt 174  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||| |||| |||||| |||||||| ||||| |||||| ||| ||||||||||||||    
T  33594618 gagtagtgatacatgcacatccattggtggcatacacacttaaaccttcacacaaacatgtgacatgtggcctagaccccacaaatactttgtctctctt 33594519  T
Q  175 ctctttcattcatctc 190  Q
    |  |||||| ||||||    
T  33594518 ccttttcatccatctc 33594503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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