View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18540_high_2 (Length: 494)
Name: NF18540_high_2
Description: NF18540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18540_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 96 - 270
Target Start/End: Complemental strand, 488063 - 487881
Alignment:
| Q |
96 |
gcatgtcatgacagttttcatgtgactgattctaaattaagtagatgttaatactagattaatgtgtgtttaagaaaaagagacaaatcaacacaaatga |
195 |
Q |
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| T |
488063 |
gcatgtcatgatagttttcatgtgactggttctaaattaagtagatgttaatactagattaatgtgtgtttaagaaaaagagacaaatcaacacaaatga |
487964 |
T |
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| Q |
196 |
gggaaaagtact--------agtacaatttttgtaatttaaaaaggaacagataacgtgccgaccaaaagagtcaaaataatt |
270 |
Q |
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| T |
487963 |
gggaaaagtagtaggctaggagcacaatttttagaatttaaaaagaaacagataacgtgccgaccaaaatagtcaaaataatt |
487881 |
T |
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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 412 - 477
Target Start/End: Complemental strand, 487676 - 487611
Alignment:
| Q |
412 |
tttcaaacaaatatattaagataacgtaagaaggaagccaaaaacatttttctaacaccttatttt |
477 |
Q |
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| T |
487676 |
tttcaaacaaatatattaagataacgtaagaaggaagtcaaaaacatttttctaacaccttatttt |
487611 |
T |
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