View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18540_high_4 (Length: 345)
Name: NF18540_high_4
Description: NF18540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18540_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 29036160 - 29035871
Alignment:
| Q |
19 |
ggtacaccacttgaaggaggaaagattgcagattctgaaccagttgatttgttttcaagtgcacaaaatatttcaaagagtgatcaacaacaacaaactg |
118 |
Q |
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| T |
29036160 |
ggtacaccacttgaaggaggaaagattgcagattctgaaccagttgatttgttttcaagtgcacaaaatatttcaaagagtgatcaacaacaacaaactg |
29036061 |
T |
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| Q |
119 |
cagattctaatcaatctcagttgcaacgtgatgacacaaaagatggagaaggagattctactgatttcactactggtgctccttgcttacctcacaagaa |
218 |
Q |
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| T |
29036060 |
cagattctaatcaatctcagttgcaacgtgatgacacaaaagatggagaaggagattctactgatttcactcctggtgctccttgtttacctcacaagaa |
29035961 |
T |
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| Q |
219 |
caagcctcaaacacttggtcataaattttgatgataaaataagaacatagaaatattaattatgtgttccatatgtatattaattttaac |
308 |
Q |
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| T |
29035960 |
caagcctcaaacacttggtcataaattttaatgataaaataagaacatagaagtattaattatgtgttccatatgtatattaattttaac |
29035871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 29035870 - 29035812
Alignment:
| Q |
273 |
attaattatgtgttccatatgtatattaattttaacttttctgtgtgttttctgatacc |
331 |
Q |
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| T |
29035870 |
attaattatgtgttccatatgtatattaattttaacttttgtgtgtgttttctgatacc |
29035812 |
T |
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