View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18540_high_6 (Length: 330)
Name: NF18540_high_6
Description: NF18540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18540_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 24 - 324
Target Start/End: Original strand, 27771544 - 27771844
Alignment:
| Q |
24 |
ggaacttgaacattgtgtattgaagcattcgaagtgaatacgctagaacgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaa |
123 |
Q |
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| T |
27771544 |
ggaacttgaacatgatgtgttgaagcattcgaagtgaatacgctagaacgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaa |
27771643 |
T |
|
| Q |
124 |
gatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaacaatctgtgacagtagtactnnnnnn |
223 |
Q |
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| T |
27771644 |
gatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaacaatctgtgacagtagtactaaaaaa |
27771743 |
T |
|
| Q |
224 |
ngcatctccttttttgtagctaaaaactgcaatggattttatttgagcatcatctaaaccaaaggttgaaacttgacaattttcgcggcgatattcttgg |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27771744 |
agcatctccttttttgtagctaaaaactgcaatggattttatttgagcatcatctaaaccaaaggttgaaacttgacaattttcgcggcgattttcttgg |
27771843 |
T |
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| Q |
324 |
a |
324 |
Q |
| |
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| |
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| T |
27771844 |
a |
27771844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 205
Target Start/End: Original strand, 37504077 - 37504182
Alignment:
| Q |
100 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaaca |
199 |
Q |
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| T |
37504077 |
taagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaattcacctagacaaacagaaca |
37504176 |
T |
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| Q |
200 |
atctgt |
205 |
Q |
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||||| |
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| T |
37504177 |
ctctgt |
37504182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 71 - 205
Target Start/End: Original strand, 12617788 - 12617922
Alignment:
| Q |
71 |
acgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatca |
170 |
Q |
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|||||| ||||||||| |||| | |||||| |||||||||||||||||||||||||||||| ||||| |||| | ||||||||||||| ||| ||||| |
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| T |
12617788 |
acgacaaagaggacaattagaatgagatttgagccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcg |
12617887 |
T |
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| Q |
171 |
tcttgaaactcacttagacaaactgaacaatctgt |
205 |
Q |
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| T |
12617888 |
tcttgaaactcgtttagacaaacagaacaatctgt |
12617922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 37227861 - 37227965
Alignment:
| Q |
100 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaaca |
199 |
Q |
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||||||| |||||||||||||| | ||||||| ||||||||||| |||| |||||||||| | | ||||| |||| ||||||||| | |||||| ||||| |
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| T |
37227861 |
taagccaagtatcaatacaaggtaaatgaaaagcatggttacactttggcaaaagtctaagattctcatcttcttcaaactcactcaaacaaacagaaca |
37227960 |
T |
|
| Q |
200 |
atctg |
204 |
Q |
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||||| |
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| T |
37227961 |
atctg |
37227965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 1867112 - 1867028
Alignment:
| Q |
100 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcact |
184 |
Q |
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||||||| |||||||||||| | | ||||||| |||| | |||| | ||||||||||||| | | ||||| |||| ||||||||| |
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| T |
1867112 |
taagccaagtatcaatacaaagtaaatgaaaagcatgatgacacttaggtaaaagtctaagattctcatcttcttcaaactcact |
1867028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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