View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18540_high_9 (Length: 266)
Name: NF18540_high_9
Description: NF18540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18540_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 9e-82; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 26267736 - 26267552
Alignment:
| Q |
20 |
ttttattctttaaaatcttctttaatcttttcatatgttcctaaatattgtgttttgtaacatgcaggttagggctcctatgtatgatattctaaaagga |
119 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
26267736 |
ttttcttctttaaaatcttctttaatcttttcatatgttcctaaatattgtgttttgtaacatgcaag-----gctcctatgtatgatattctaaaagga |
26267642 |
T |
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| Q |
120 |
agggaggatggaaggtcaaaacttgaagatactttgaatctccaagccccaacattaaatgcttctcaactcataaggatttttgggcaa |
209 |
Q |
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| T |
26267641 |
agggaggatggaaggtcaaaacttgaagatactttcaatctccaagccccaatattaaatgcttctcaactcataaggatttttgggcaa |
26267552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 30 - 209
Target Start/End: Complemental strand, 26264516 - 26264331
Alignment:
| Q |
30 |
taaaatcttctttaatcttttcatatgttcctaaatattgtgttttgtaacatg--caggttagggctcctatgtatgatattctaaaaggaaggga-gg |
126 |
Q |
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|||||| |||||||| |||||||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| | || |
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| T |
26264516 |
taaaatattctttaaacttttcatattttcctaacaattgtgttttgtaacatgtgcaggttagggctcccatgtatgatatttcaaaaggaaggaaagg |
26264417 |
T |
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| Q |
127 |
atggaag---gtcaaaacttgaagatactttgaatctccaagccccaacattaaatgcttctcaactcataaggatttttgggcaa |
209 |
Q |
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| T |
26264416 |
gtggaagaaggacaaaacttgaagatactttcaatctctgagtcccaacattcaatgcttctcaactcataaggatttttgggcaa |
26264331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 26265079 - 26264967
Alignment:
| Q |
96 |
cctatgtatgatattctaaaaggaagggaggatggaag---gtcaaaacttgaagatactttgaatctccaagccccaacattaaatgcttctcaactca |
192 |
Q |
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| T |
26265079 |
cctatgtataatattctaaaaggaagggaggatggaagaaggtcaaaacttgaagatactttcaatctccaagcccgaacattaaatgcttctcaactca |
26264980 |
T |
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| Q |
193 |
taaggatttttgg |
205 |
Q |
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| T |
26264979 |
taaggatttttgg |
26264967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 26267206 - 26267167
Alignment:
| Q |
211 |
ctacaaactaaactaaagtaaactaaattgtgtcaccaca |
250 |
Q |
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| T |
26267206 |
ctacaaactaaactaaagtaaactaaattgtgtcaccaca |
26267167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 23574608 - 23574800
Alignment:
| Q |
20 |
ttttattctttaaaatcttctttaatcttttcatatgttcctaaatattgtgttttgtaacatg--caggttagggctcctatgtatgatattctaaaag |
117 |
Q |
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|||| |||||||||||||||||||| |||||||||| | |||| |||||||||||||||||| |||||||||| |||||||||||||||| ||| | |
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| T |
23574608 |
ttttcttctttaaaatcttctttaaacttttcatatttcactaacaattgtgttttgtaacatgtgcaggttagggttcctatgtatgatatttcaaagg |
23574707 |
T |
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| Q |
118 |
gaagggaggatggaa---ggtcaaaacttgaagatactttgaatctccaagccccaacattaaatgcttctcaactcataaggatttttgggca |
208 |
Q |
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| T |
23574708 |
gaaggaaggatagaaaaaggtcaaaacttgaagatacattcaatctccaagccccaacatt-aatgcttctcaactcttaaggatttttgggca |
23574800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 23583374 - 23583425
Alignment:
| Q |
156 |
aatctccaagccccaacattaaatgcttctcaactcataaggatttttgggca |
208 |
Q |
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| T |
23583374 |
aatctccaagccccaacattaa-tgcttctcaactcttaaggatttttgggca |
23583425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 23598197 - 23598248
Alignment:
| Q |
156 |
aatctccaagccccaacattaaatgcttctcaactcataaggatttttgggca |
208 |
Q |
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| T |
23598197 |
aatctccaagccccaacattaa-tgcttctcaactcttaaggatttttgggca |
23598248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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