View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18540_low_16 (Length: 233)
Name: NF18540_low_16
Description: NF18540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18540_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 31006178 - 31005977
Alignment:
| Q |
16 |
aatatccaccagagatctcacactgagcacaatcctcagcttttctccaattaagcacaaacccttttttcatagctgaaccaaatccatttatcaaacc |
115 |
Q |
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| T |
31006178 |
aataaccaccagagatctcacactgagcacaatcctcagcttttctccaattaagcacaaacccttttttcatagctgaaccaaatccatttatcaaacc |
31006079 |
T |
|
| Q |
116 |
accaacaacatcatttaactcatcactcttcacaatcacattaacatgttcctcacacttccaattatcatagccaatttcaccttcatcactagccaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31006078 |
accaacaacatcatttaactcatcactcttcacaatcacattaacatgttcctcacacttccaattatcatagccaatttcaccttcatcactagccaaa |
31005979 |
T |
|
| Q |
216 |
at |
217 |
Q |
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|| |
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| T |
31005978 |
at |
31005977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 30937921 - 30937762
Alignment:
| Q |
57 |
tttctccaattaagcacaaacccttttttcatagctgaaccaaatccatttatcaaaccaccaacaacatcatttaact--catc--------actcttc |
146 |
Q |
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|||||| ||| ||||||||||||||||||||||| ||||||||||| | | |||||||||||||||||||||||||||| | || |||||| |
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| T |
30937921 |
tttctcaaatcaagcacaaacccttttttcatagttgaaccaaatcgaataatcaaaccaccaacaacatcatttaacttccttcaaaaagaaactcttt |
30937822 |
T |
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| Q |
147 |
acaatcacattaacatgttcctcacacttccaattatcatagccaatttcaccttcatca |
206 |
Q |
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|||||||| ||||||||||||||| |||| |||||||||| ||||||| |||||||| |
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| T |
30937821 |
acaatcaccacaacatgttcctcacaattcctattatcatagacaatttctgcttcatca |
30937762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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