View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18540_low_17 (Length: 226)
Name: NF18540_low_17
Description: NF18540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18540_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 24690466 - 24690691
Alignment:
| Q |
1 |
agcatcatgtggacttcgagagtcatcaaaacaaataatatttcagtgtaactttgttagtgaactgaagatccatgatctgcatactgaacctcataat |
100 |
Q |
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| T |
24690466 |
agcatcatgtggacttcgagagtcatcaaaacaaataatatttcagtgtaactttgttagtgaactgaagatccatgatctgcatactgaacctcataat |
24690565 |
T |
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| Q |
101 |
attcatactggtcatctaggcctgcgcagtgatggtctgatgattactgcactcacattgcgaagagttgatcttaagaactggtccataccactgattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24690566 |
attcatactggtcatctaggcctgcgcagtgatggtctgatgattactgcactcacattgcgaagagttgatcttaagaactggtccataccactgattc |
24690665 |
T |
|
| Q |
201 |
acacttcagagcaaggaccatcagtt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
24690666 |
acacttcagagcaaggaccatcagtt |
24690691 |
T |
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