View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18540_low_3 (Length: 370)
Name: NF18540_low_3
Description: NF18540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18540_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 101 - 326
Target Start/End: Complemental strand, 12541275 - 12541048
Alignment:
| Q |
101 |
acatgatcaaattagaatagcattaattaaaacattattattttccagtacacacacttggaagcaaagctatagaagtgaaagtaaaagcagaagcatg |
200 |
Q |
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| T |
12541275 |
acatgaacaaattagaattacattaattaag-cattattattttgcagtgcacacacttggaagcaaagatgtagaagtgaaagtaaaagcagaagcatg |
12541177 |
T |
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| Q |
201 |
gtccttaaattagaaaactagaaagcatgtaatctagaatattcaataggc---aagtagctccttctgtccttcctttgcaacatccatcactatttct |
297 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||| | ||| | ||||||||||| |||||||||||| | ||||||| |||||| |
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| T |
12541176 |
gtccttaaattaaaaaactagaaagcatgtaatctacaatattccaccggcaggacgtagctccttccgtccttcctttgaaggatccatccttatttca |
12541077 |
T |
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| Q |
298 |
gtattgtacagctagcaccaaattattat |
326 |
Q |
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||| |||||||||| ||| |||||||| |
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| T |
12541076 |
atatggtacagctagacccatattattat |
12541048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 12534973 - 12535092
Alignment:
| Q |
129 |
aaaacattattattttccagtacacacacttggaagcaaagcta----tagaagtgaaagtaaaagcagaagcatggtccttaaattagaaaactagaaa |
224 |
Q |
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| T |
12534973 |
aaaacatcgttattttctagtgcacacacttggaagcaaacttacatatagaaatgcgagtaaaaacagaagcatagtcctttaattagaaaactagaaa |
12535072 |
T |
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| Q |
225 |
gcatgtaatctagaatattc |
244 |
Q |
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||| ||| |||| ||||||| |
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| T |
12535073 |
gcaagtagtctacaatattc |
12535092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 47569791 - 47569740
Alignment:
| Q |
185 |
taaaagcagaagcatggtccttaaattagaaaactagaaagcatgtaatcta |
236 |
Q |
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| T |
47569791 |
taaaagcaaaaacatagtccttaaattagaaaactagaaagcatgtaatcta |
47569740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 28239831 - 28239767
Alignment:
| Q |
172 |
atagaagtgaaagtaaaagcagaagcatggtccttaaattagaaaactagaaagcatgtaatcta |
236 |
Q |
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| T |
28239831 |
atagaagtgcaattaaaagcaaaaacaaagtccttaaattagcaaactagaaagcatgtaatcta |
28239767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 12531936 - 12531979
Alignment:
| Q |
76 |
gaacatatatgggccaaatacgcagacatgatcaaattagaata |
119 |
Q |
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| T |
12531936 |
gaacatatatcggccaaatacgcagacacgatcaaattagaata |
12531979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 12541323 - 12541275
Alignment:
| Q |
4 |
caagacaatcataaggcattattgaagagaaaatataaaacaagaaaca |
52 |
Q |
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| T |
12541323 |
caagacaatgataaggcataatcaaagagaaaatataaaacaagaaaca |
12541275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 14508386 - 14508432
Alignment:
| Q |
186 |
aaaagcagaagcatggtccttaaattagaaaactagaaagcatgtaa |
232 |
Q |
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| T |
14508386 |
aaaagcaaaagcatagtcctttaattagaaaaatagaaagcatgtaa |
14508432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 384134 - 384193
Alignment:
| Q |
170 |
ctatagaagtgaaagtaaaagcagaagcatggtccttaaattagaaaactagaaagcatg |
229 |
Q |
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||||||||||| || ||||||||||||||| || | |||||||||||||||||||||||| |
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| T |
384134 |
ctatagaagtgcaactaaaagcagaagcatagtgcataaattagaaaactagaaagcatg |
384193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 16375837 - 16375795
Alignment:
| Q |
194 |
aagcatggtccttaaattagaaaactagaaagcatgtaatcta |
236 |
Q |
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| T |
16375837 |
aagcatgatcctttaattagaaaactacaaagcatgtaatcta |
16375795 |
T |
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