View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18540_low_9 (Length: 269)
Name: NF18540_low_9
Description: NF18540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18540_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 52820550 - 52820333
Alignment:
| Q |
13 |
aatatattggtccaaaaagcatggaatttagatctttaagtaagtggtttagattcgatcatttatggagagaagaatgttaacaacacacattttaac- |
111 |
Q |
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| T |
52820550 |
aatatattggtccaaaaagcatggaatttagatctttaagtaagtggtttagattcgatcatttatggagagaagaatgttaacaaaacacattttaaca |
52820451 |
T |
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| Q |
112 |
acannnnnnncaacccactctctaattggttgaaattcaaatagattccatcaaatcatgtaggtctcatgtaaatttagtggaatcaatttaaatttaa |
211 |
Q |
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| T |
52820450 |
atttttttttcaacccactctctaattggttgaaattcaaatagattccatcaaatcatgtaggtctcatgtaaatttagtagaatcaatctaaatttaa |
52820351 |
T |
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| Q |
212 |
ctgattagaaaatgtgtt |
229 |
Q |
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| T |
52820350 |
ctgattagagagtgtgtt |
52820333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 47949119 - 47949052
Alignment:
| Q |
127 |
cactctctaattggttgaaattcaaatagattccatcaaatcatgtaggtctcatgtaaatttagtgg |
194 |
Q |
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| T |
47949119 |
cactctctaattggttgaaattcaattggatcccacgaaatcatgtaggccccacataaatttagtgg |
47949052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 6103652 - 6103588
Alignment:
| Q |
132 |
tctaattggttgaaattcaaatagattccatcaaatcatgtaggtctcatgtaaatttagtggaa |
196 |
Q |
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| T |
6103652 |
tctaattggttgaaattcaaatggatcccactaaatcatctaggccccatataaatttattggaa |
6103588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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