View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18541_high_11 (Length: 251)
Name: NF18541_high_11
Description: NF18541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18541_high_11 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 6214770 - 6214531
Alignment:
| Q |
12 |
tatactatactatactactaattatgttatagtatttcctgaattaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagt |
111 |
Q |
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| T |
6214770 |
tatactatactatactactaattatgttatagtatttcctgaattaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagt |
6214671 |
T |
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| Q |
112 |
attctaccaactataaatggattaatatcaagtggtataagcatttggatgtacaggtaataaagtttataatgtaatatcacatcaaagacattatcaa |
211 |
Q |
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| T |
6214670 |
attctgccaactataaatggattaatatcaagtggtataagcatttggatgtacaggtaataaagtttataatgtaatatcacatcaaagacattatcaa |
6214571 |
T |
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| Q |
212 |
tatcactttctttatatgtaacattgcttgtttttgttat |
251 |
Q |
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| T |
6214570 |
tatcactttctttatgtgtaacaatgcttgtttttgttat |
6214531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 35 - 170
Target Start/End: Complemental strand, 6177239 - 6177104
Alignment:
| Q |
35 |
atgttatagtatttcctgaattaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
134 |
Q |
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| T |
6177239 |
atgttgtactatttcctgaatcaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
6177140 |
T |
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| Q |
135 |
aatatcaagtggtataagcatttggatgtacaggta |
170 |
Q |
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| T |
6177139 |
aatatcaagtggtataagcatatggatatacaggta |
6177104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 170
Target Start/End: Complemental strand, 6207025 - 6206916
Alignment:
| Q |
61 |
tgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggattaatatcaagtggtataagcatttgga |
160 |
Q |
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| T |
6207025 |
tgtctaatgctctttttcagtggtgtgggttggacagatagtccaactagtattctaccaactataaatcagttaatatcaagtggtataagcatatgga |
6206926 |
T |
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| Q |
161 |
tgtacaggta |
170 |
Q |
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| T |
6206925 |
tatacaggta |
6206916 |
T |
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