View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18541_high_13 (Length: 236)
Name: NF18541_high_13
Description: NF18541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18541_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 444822 - 445051
Alignment:
| Q |
1 |
cttagggcgttttcagcctaaatattatgattttgtatcggcatctctcagcatcaagactgcggctttatcattccttgcaggtggttgaaaaggattg |
100 |
Q |
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| T |
444822 |
cttaggtcgtgttcagcctaaatattatgattttgtatcggcatctctcagcatcaagactgcggctttatcattcgttgcaggtggttgaaaaggattg |
444921 |
T |
|
| Q |
101 |
tgatgattcagacagcgatgatgagttgcctcatttgaaggtgtgattaaatcatagtatttgaatcgatgttgnnnnnnngttaagattagtggctttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
444922 |
tgatgattcagacagcgatgatgagttgcctcatttgaaggtgtgattaaatcatagtatttgaatcgatgttgtttttttgttaagattagtggctttc |
445021 |
T |
|
| Q |
201 |
atattaagttgtctgtaattgatgatgtcc |
230 |
Q |
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|||||||||||||||||||||||| ||||| |
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| T |
445022 |
atattaagttgtctgtaattgatggtgtcc |
445051 |
T |
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