View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18541_high_7 (Length: 266)
Name: NF18541_high_7
Description: NF18541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18541_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 106 - 246
Target Start/End: Complemental strand, 28072745 - 28072605
Alignment:
| Q |
106 |
atagtagtatagtaccatatatatgcactatatacagtggtaacataaattaattaagctctgtgtagagcatatagaaaaacatctgttggaattgatg |
205 |
Q |
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| T |
28072745 |
atagtagtatagtaccatatatatgcactatatacagtggtaacataaattaattaagctctgtgtagagcatatagaaaaacatctgttggaattgatg |
28072646 |
T |
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| Q |
206 |
atgaatatatctgttagctcggttaaattggatcttgtgac |
246 |
Q |
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| T |
28072645 |
atgtatatatcagttagctcagttaaattggatcttgtgac |
28072605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 28072866 - 28072762
Alignment:
| Q |
19 |
aaaagacattaatatttgactatattggacatgataaggttagatcatatatacaccacattcatagcaccatgtaatagaaatgatatagtagtatagt |
118 |
Q |
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| T |
28072866 |
aaaagacattaatatttgactatattggacatgataaggttagatcatatatacactacattcatagcaccatgtaatagaaatgatatagtagtatagt |
28072767 |
T |
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| Q |
119 |
accat |
123 |
Q |
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| T |
28072766 |
accat |
28072762 |
T |
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