View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18541_low_1 (Length: 534)
Name: NF18541_low_1
Description: NF18541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18541_low_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 517
Target Start/End: Complemental strand, 5830065 - 5829559
Alignment:
| Q |
11 |
agaatatgtaatgtatttaaattgatgatatatgtctttgcagactattgccttggttggagaaagtggcagtggaaaatcaacagttatcagcctctta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5830065 |
agaatatgtaatgtatttaaattgatgatatatgtctttgcagactattgccttggttggagaaagtggcagtggaaaatcaacagttatcagcctctta |
5829966 |
T |
|
| Q |
111 |
gagagattttatgaccctaattctggacgtatattactagatggagtggatctcaaaactttcagattaagttggttgagacaacaaatggggttggttg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5829965 |
gagagattttatgaccctaattctggacgtatattactagatggagtggatctcaaaactttcagattaagctggttgagacaacaaatggggttggttg |
5829866 |
T |
|
| Q |
211 |
gtcaagagcctattcttttcaacgaaagcattcgtgctaacataggttatggaaaagaagggggtgctacagaggatgagatcattgcagcagctaacgc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5829865 |
gtcaagagcctattcttttcaacgaaagcattcgtgctaacataggttatggaaaagaagggggtgctacagaggatgagatcattgcagcagctaacgc |
5829766 |
T |
|
| Q |
311 |
agcaaatgcacacagcttcataagtaatcttccagatggatatgacacctctgttggagaaagaggcacacaactgtccggaggacagaagcagcgcatt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5829765 |
agcaaatgcacacagcttcataagtaatcttccagatggatatgacacgtctgttggagaaagaggcacgcaactgtccggaggacagaagcagcgcatt |
5829666 |
T |
|
| Q |
411 |
gctattgcaagagccatgctaaaaaaccccaaaatacttttgcttgatgaggcgacaagtgcacttgatgctgagtcagagcgtatagttcaagaggctc |
510 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5829665 |
gctattgcaagaaccatgctaaaaaaccccaaaatacttttgcttgatgaggcgacaagtgcacttgatgctgagtcagagcgtatagttcaagaggctc |
5829566 |
T |
|
| Q |
511 |
tagatag |
517 |
Q |
| |
|
||||||| |
|
|
| T |
5829565 |
tagatag |
5829559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 30 - 517
Target Start/End: Original strand, 5768402 - 5768889
Alignment:
| Q |
30 |
aattgatgatatatgtctttgcagactattgccttggttggagaaagtggcagtggaaaatcaacagttatcagcctcttagagagattttatgacccta |
129 |
Q |
| |
|
||||| |||||||| | | || ||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
5768402 |
aattgttgatatatttttatgtagactgttgctttggttggagaaagtggcagtggaaaatcaacagttataagtctcttagagagattttataaccctg |
5768501 |
T |
|
| Q |
130 |
attctggacgtatattactagatggagtggatctcaaaactttcagattaagttggttgagacaacaaatggggttggttggtcaagagcctattctttt |
229 |
Q |
| |
|
| |||||||||||||||||||||||||||||| | |||||||||||| |||| |||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
5768502 |
actctggacgtatattactagatggagtggatataaaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattctttt |
5768601 |
T |
|
| Q |
230 |
caacgaaagcattcgtgctaacataggttatggaaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgcacacagcttc |
329 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||||| ||||||| ||||||||||| |||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
5768602 |
caacgaaagcattcgtgccaacatagcttatggcaaagaaggaggtgctatggaggatgagataattgcagcagctaaagcagccaatgcacacaatttc |
5768701 |
T |
|
| Q |
330 |
ataagtaatcttccagatggatatgacacctctgttggagaaagaggcacacaactgtccggaggacagaagcagcgcattgctattgcaagagccatgc |
429 |
Q |
| |
|
||||| ||||||| |||| |||||||||||||| || |||||||||||||| || || ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5768702 |
ataagctctcttccaaatggttatgacacctctgtcggggaaagaggcacacagctatcaggaggacagaagcagcgtattgctattgcaagagccatgc |
5768801 |
T |
|
| Q |
430 |
taaaaaaccccaaaatacttttgcttgatgaggcgacaagtgcacttgatgctgagtcagagcgtatagttcaagaggctctagatag |
517 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5768802 |
tgaaaaaccccaaaatacttttgcttgacgaggcgacaagtgcacttgatgctgagtcagagcgtatagttcaagaggctctagatag |
5768889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 31 - 517
Target Start/End: Original strand, 5826856 - 5827342
Alignment:
| Q |
31 |
attgatgatatatgtctttgcagactattgccttggttggagaaagtggcagtggaaaatcaacagttatcagcctcttagagagattttatgaccctaa |
130 |
Q |
| |
|
|||| |||||||| | | || ||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||||| | |
|
|
| T |
5826856 |
attgttgatatatttatatgtagactgttgccttggttggagaaagtggcagtggaaaatcaacagttataagtctcttggagagattttataaccctga |
5826955 |
T |
|
| Q |
131 |
ttctggacgtatattactagatggagtggatctcaaaactttcagattaagttggttgagacaacaaatggggttggttggtcaagagcctattcttttc |
230 |
Q |
| |
|
|||||||| |||||||||||||||| || || |||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5826956 |
ttctggacatatattactagatggactgaatatcaaaactttcaaactaagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttc |
5827055 |
T |
|
| Q |
231 |
aacgaaagcattcgtgctaacataggttatggaaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgcacacagcttca |
330 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
5827056 |
aacgaaagcattcgtgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaacttca |
5827155 |
T |
|
| Q |
331 |
taagtaatcttccagatggatatgacacctctgttggagaaagaggcacacaactgtccggaggacagaagcagcgcattgctattgcaagagccatgct |
430 |
Q |
| |
|
|||| |||||||| ||| || | || || || || |||||||||||||| | || || ||||| || || || || || ||||||||||| || | |
|
|
| T |
5827156 |
taagctctcttccaggtggttacaatacttcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatatt |
5827255 |
T |
|
| Q |
431 |
aaaaaaccccaaaatacttttgcttgatgaggcgacaagtgcacttgatgctgagtcagagcgtatagttcaagaggctctagatag |
517 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||| || |||||||| |||||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
5827256 |
gaaaaaccctagaatacttttacttgatgaggcaaccagtgcactcgatgctgagtcagaacgtgtagttcaagaggctttagatag |
5827342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 443 - 517
Target Start/End: Original strand, 5794860 - 5794934
Alignment:
| Q |
443 |
aatacttttgcttgatgaggcgacaagtgcacttgatgctgagtcagagcgtatagttcaagaggctctagatag |
517 |
Q |
| |
|
||||||||| ||||||||||| || |||||||| |||||||||||||| | | |||||||||||||| ||||||| |
|
|
| T |
5794860 |
aatacttttacttgatgaggcaaccagtgcactcgatgctgagtcagaacatgtagttcaagaggctttagatag |
5794934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 21 - 517
Target Start/End: Complemental strand, 29327573 - 29327073
Alignment:
| Q |
21 |
atgtatttaaattgatgatatatgt----ctttgcagactattgccttggttggagaaagtggcagtggaaaatcaacagttatcagcctcttagagaga |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29327573 |
atgtatttaaattgatgatatatgtatgtctttgcagactgttgctttggttggagaaagcggcagtggaaaatcaacagttatcagcctcttagagaga |
29327474 |
T |
|
| Q |
117 |
ttttatgaccctaattctggacgtatattactagatggagtggatctcaaaactttcagattaagttggttgagacaacaaatggggttggttggtcaag |
216 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
29327473 |
ttttatgaccctaattccggacgcgtattactagatggagtggatatcaaaactttcagaataagctggttgagacaacaaatgggtttggttggtcaag |
29327374 |
T |
|
| Q |
217 |
agcctattcttttcaacgaaagcattcgtgctaacataggttatggaaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||| |||||| ||||||| |||||||| |||||||||||||| |||||||| |||||||| || |
|
|
| T |
29327373 |
agcctattcttttcaacgaaagcattcgcgccaacatagcttatggtaaagaagatggtgctacggaggatgagatcatagcagcagcgaacgcagccaa |
29327274 |
T |
|
| Q |
317 |
tgcacacagcttcataagtaatcttccagatggatatgacacctctgttggagaaagaggcacacaactgtccggaggacagaagcagcgcattgctatt |
416 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||| |||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||| |
|
|
| T |
29327273 |
tgcacacaacttcataagttctcttcctgatggttatgacacttctgttggcgaaagaggcacacaactatctggaggacagaagcagcgcattgcgatt |
29327174 |
T |
|
| Q |
417 |
gcaagagccatgctaaaaaaccccaaaatacttttgcttgatgaggcgacaagtgcacttgatgctgagtcagagcgtatagttcaagaggctctagata |
516 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29327173 |
gcaagagccatgctgaaaaaccctaaaatacttttgcttgatgaggcaacaagtgcacttgatgccgagtcagagcgtatagttcaagaggctctagata |
29327074 |
T |
|
| Q |
517 |
g |
517 |
Q |
| |
|
| |
|
|
| T |
29327073 |
g |
29327073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 484
Target Start/End: Complemental strand, 3426418 - 3426377
Alignment:
| Q |
443 |
aatacttttgcttgatgaggcgacaagtgcacttgatgctga |
484 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
3426418 |
aatacttttacttgatgaagcgacaagtgcacttgacgctga |
3426377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 481
Target Start/End: Complemental strand, 38525387 - 38525287
Alignment:
| Q |
381 |
caactgtccggaggacagaagcagcgcattgctattgcaagagccatgctaaaaaaccccaaaatacttttgcttgatgaggcgacaagtgcacttgatg |
480 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||||||||| || || || || || | ||| || | |||||||| || |||||||||||||||| |
|
|
| T |
38525387 |
caactgtctggtggacagaagcagcgcattgcgattgcaagagcaatccttaagaatccaagaattctacttcttgatgaagctacaagtgcacttgatg |
38525288 |
T |
|
| Q |
481 |
c |
481 |
Q |
| |
|
| |
|
|
| T |
38525287 |
c |
38525287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 29934488 - 29934416
Alignment:
| Q |
58 |
ttgccttggttggagaaagtggcagtggaaaatcaacagttatcagcctcttagagagattttatgaccctaa |
130 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||| || | | ||| | ||||||||||||||||| |
|
|
| T |
29934488 |
ttgccctggttggagaaagtggaagtggaaaatcaacagtgatgtccttattacaaagattttatgaccctaa |
29934416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 51159544 - 51159577
Alignment:
| Q |
64 |
tggttggagaaagtggcagtggaaaatcaacagt |
97 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
51159544 |
tggttggagaaagtggaagtggaaaatcaacagt |
51159577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 487
Target Start/End: Complemental strand, 29934073 - 29933973
Alignment:
| Q |
387 |
tccggaggacagaagcagcgcattgctattgcaagagccatgctaaaaaaccccaaaatacttttgcttgatgaggcgacaagtgcacttgatgctgagt |
486 |
Q |
| |
|
||||| |||||||||||||| | || ||||||||||| || | || || || |||||||| || || ||||| || || ||||||||||||||||||| |
|
|
| T |
29934073 |
tccgggggacagaagcagcgggtggcaattgcaagagcgttggtgaagaatccgaaaatactattactagatgaagcaactagtgcacttgatgctgagt |
29933974 |
T |
|
| Q |
487 |
c |
487 |
Q |
| |
|
| |
|
|
| T |
29933973 |
c |
29933973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 514
Target Start/End: Complemental strand, 41174446 - 41174385
Alignment:
| Q |
453 |
cttgatgaggcgacaagtgcacttgatgctgagtcagagcgtatagttcaagaggctctaga |
514 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| |||||| | |||||||||||| ||||| |
|
|
| T |
41174446 |
cttgacgaggcaacaagtgcacttgatgctgaatcagagagatcagttcaagaggcgctaga |
41174385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 36288551 - 36288588
Alignment:
| Q |
64 |
tggttggagaaagtggcagtggaaaatcaacagttatc |
101 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
36288551 |
tggtaggagaaagtggaagtggaaaatcaacagttatc |
36288588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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