View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18541_low_10 (Length: 258)
Name: NF18541_low_10
Description: NF18541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18541_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 46631145 - 46631377
Alignment:
| Q |
1 |
tgctgtgatccggttaacttctggttcaaatgaaacatctaaaagtattgaagatgctgctgctgttaaaattcaatgtgtctttcgatctcacttggta |
100 |
Q |
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| T |
46631145 |
tgctgtgatccggttaacttctggttcaaatgaaacatctaaaagtattgaagatgctgctgctgttaaaattcaatgtgtctttcgatctcacttggta |
46631244 |
T |
|
| Q |
101 |
tgaagttagttttcctagtccttgaaattttaagggtcggtcaatttaatctttcaaatttgcgaattagtattttagtcccttaaagtgaacaatgtca |
200 |
Q |
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| T |
46631245 |
tgaagttagttttcctagtccttgaaattttaagggtcggtcaatttaatctttcaaatttgcgaattagtattttagtcccttaaagtgaacaatgtca |
46631344 |
T |
|
| Q |
201 |
gataatttcgttgtttttccaaatttatcgcca |
233 |
Q |
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| T |
46631345 |
gataatttcgttgtttttccaaatttatcgcca |
46631377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 211
Target Start/End: Complemental strand, 35138631 - 35138536
Alignment:
| Q |
116 |
tagtccttgaaattttaagggtcggtcaatttaatctttcaaatttgcgaattagtattttagtcccttaaagtgaacaatgtcagataatttcgt |
211 |
Q |
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| T |
35138631 |
tagtccttgaaattttaaggatcggtcaatttagtatttcaaatttgcgaaatagcaatttagtcccttaaattgaacaatgttagtcaatttcgt |
35138536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 32811192 - 32811090
Alignment:
| Q |
126 |
aattttaagggtcggtcaatttaa-tctttcaaatttgcgaattagtattttagtcccttaaagtgaacaatgtcagataatttcgttgtttttccaaat |
224 |
Q |
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| T |
32811192 |
aattataagggtcggtaaattttagtccctcaaatttgcaaaatagaaatttagtcccttaaattgaacaacgtcagttaattatgttatttttccaaat |
32811093 |
T |
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| Q |
225 |
tta |
227 |
Q |
| |
|
||| |
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| T |
32811092 |
tta |
32811090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 42510706 - 42510790
Alignment:
| Q |
116 |
tagtccttgaaattttaagggtcggtcaatttaatctttcaaatttgcgaattagtattttagtcccttaaagtgaacaatgtca |
200 |
Q |
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|||||||||||||| ||| |||||||||||||| || || |||| |||||| ||| | |||||||||||||| |||| ||||||| |
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| T |
42510706 |
tagtccttgaaattgtaaaggtcggtcaatttagtccttgaaatctgcgaaataggagtttagtcccttaaattgaaaaatgtca |
42510790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 8951432 - 8951360
Alignment:
| Q |
120 |
ccttgaaattttaagggtcggtcaatttaatctttcaaatttgcgaattagtattttagtcccttaaagtgaa |
192 |
Q |
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| T |
8951432 |
ccttgaaattataagggtctgtcaatttagtcctccaaatttgtgaaatagcaaattagtcccttaaattgaa |
8951360 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 11567578 - 11567623
Alignment:
| Q |
116 |
tagtccttgaaattttaagggtcggtcaatttaatctttcaaattt |
161 |
Q |
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| T |
11567578 |
tagtccttgaaattgtaagggtcggtcaatttagtccctcaaattt |
11567623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 5539971 - 5540039
Alignment:
| Q |
116 |
tagtccttgaaattttaagggtcggtcaatttaatctttcaaatttgcgaattagtattttagtccctt |
184 |
Q |
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| T |
5539971 |
tagtcattgaaattgtaagggtcagtcaattcaatccctcaaatttgtgaaatagcaatttagtccctt |
5540039 |
T |
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