View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18541_low_13 (Length: 250)

Name: NF18541_low_13
Description: NF18541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18541_low_13
NF18541_low_13
[»] chr5 (1 HSPs)
chr5 (32-242)||(1961998-1962208)
[»] chr3 (1 HSPs)
chr3 (45-98)||(54258683-54258736)
[»] chr2 (2 HSPs)
chr2 (32-86)||(41170693-41170747)
chr2 (45-86)||(4661356-4661397)
[»] chr1 (1 HSPs)
chr1 (32-98)||(32515362-32515428)
[»] chr7 (1 HSPs)
chr7 (12-41)||(28844477-28844506)
[»] chr6 (1 HSPs)
chr6 (50-86)||(31672462-31672498)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 1961998 - 1962208
Alignment:
Q  32 ataagctattccgaacattctcacaagtgtttatatgagtagataaactcaaatatgatgatccaaagaaacataccacgaccaaagacatttatggttt 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1961998 ataagctattccgaacattctcacaagtgtttatatgagtagataaactcaaatatgatgatccaaagaaacataccacgaccaaagacatttatggttt 1962097  T
Q  132 cattaacaaatcttctacaatcatcttccttgacaacatctgctgccataatcataacatgtcttgctcccattctccttgcattctcagcaattcctat 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1962098 cattaacaaatcttctacaatcatcttccttgacaacatctgctgccataatcataacatgtcttgctcccattctccttgcattctcagcaattcctat 1962197  T
Q  232 tagcctatgct 242  Q
    |||||||||||    
T  1962198 tagcctatgct 1962208  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 54258683 - 54258736
Alignment:
Q  45 aacattctcacaagtgtttatatgagtagataaactcaaatatgatgatccaaa 98  Q
    |||| ||||||||||||||||||||||| ||||||| ||||| | |||||||||    
T  54258683 aacaatctcacaagtgtttatatgagtaaataaactaaaataagttgatccaaa 54258736  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 41170693 - 41170747
Alignment:
Q  32 ataagctattccgaacattctcacaagtgtttatatgagtagataaactcaaata 86  Q
    ||||| |||||| || | |||||||||||||||| | ||||||||||||||||||    
T  41170693 ataagttattccaaatagtctcacaagtgtttatgttagtagataaactcaaata 41170747  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 4661356 - 4661397
Alignment:
Q  45 aacattctcacaagtgtttatatgagtagataaactcaaata 86  Q
    |||| ||| ||||| |||||||||||||||||||||||||||    
T  4661356 aacaatcttacaagagtttatatgagtagataaactcaaata 4661397  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 32515428 - 32515362
Alignment:
Q  32 ataagctattccgaacattctcacaagtgtttatatgagtagataaactcaaatatgatgatccaaa 98  Q
    ||||||| | || |||| ||||||||||| |||| | |||||||||||||||||||| | |||||||    
T  32515428 ataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaatatgctaatccaaa 32515362  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 28844477 - 28844506
Alignment:
Q  12 aagctattttcatataagctataagctatt 41  Q
    ||||||||||||||||||||||||||||||    
T  28844477 aagctattttcatataagctataagctatt 28844506  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 31672498 - 31672462
Alignment:
Q  50 tctcacaagtgtttatatgagtagataaactcaaata 86  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  31672498 tctcactagtgtttatgtgagtagataaactcaaata 31672462  T

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