View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18541_low_2 (Length: 502)
Name: NF18541_low_2
Description: NF18541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18541_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 1961866 - 1961604
Alignment:
| Q |
1 |
taaagtttatactgtaattgtatacattattagtttaatttgattgcacatttaaattatatcaccatgactcttcaaattattaaagaaaattttgttt |
100 |
Q |
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| T |
1961866 |
taaagtttatactgtaattgtatacattattagtttagtttgattgcacatttaaattatatcaccatgactcttcaaattattaaagaaaattttgttt |
1961767 |
T |
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| Q |
101 |
gtgtgagtgcagtagatcaccttgtaaatacagtaagtttgggacatacattctactttgaagaagttacagacacctcagttttccctgttctcttggt |
200 |
Q |
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| T |
1961766 |
gtgtgagtgcagtagatcaccttgtaaatacagtaagtttgggacatacattctactttgaagaagttacagacacctcagttttccctgttctcttggt |
1961667 |
T |
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| Q |
201 |
gagaatttcaatttgcatatagcatgaatttcaaaatcgtcgcttccgtaattcatttaaaatta |
265 |
Q |
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| T |
1961666 |
gagaatttcaatttgcatatagcatgaatttc--aatcgtcgctaccgtaattcatttaaaatta |
1961604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 263 - 484
Target Start/End: Complemental strand, 1961582 - 1961361
Alignment:
| Q |
263 |
ttattgcttgatcatattattatgagataatgtggtctttttaggatattaatttttgggggaatgtttatccaacgttggtggctcttccttaccttca |
362 |
Q |
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| T |
1961582 |
ttattgcttgatcatattattatgagataatgtggtctttttaggatattaatttttgggggaatgtttatccaactttggtggctcttccttaccttca |
1961483 |
T |
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| Q |
363 |
ccaaagcaatggccgcgttattatcaatgcatcagttgagagttggttacctttgccaaggatgagtttgtttggtgtaagtacatgacattaattctgt |
462 |
Q |
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| T |
1961482 |
ccaaagcaatggccgtgttattatcaatgcatcagttgagagttggttacctttgccaaggatgagtttgtttggtgtaagtacatgacattaattctgt |
1961383 |
T |
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| Q |
463 |
gttttattaatgaatgttgctt |
484 |
Q |
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| T |
1961382 |
gttttattaatgaatgttgctt |
1961361 |
T |
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