View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18541_low_4 (Length: 393)
Name: NF18541_low_4
Description: NF18541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18541_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 444844 - 444471
Alignment:
| Q |
1 |
atttaggctgaaaacgacctaaggaatttttataaaacatttatcgaacnnnnnnngaaaggatacctcaatgctggatgaaaagaagctgtgcaagtag |
100 |
Q |
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| T |
444844 |
atttaggctgaacacgacctaaggaatttttataaaacatttatcgaacaaaaaaagaaaggatacctcaatgctggatgaaaagaagctgtgcaaatag |
444745 |
T |
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| Q |
101 |
catttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaactgcttcattctcttcctattgaaa |
200 |
Q |
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| T |
444744 |
catttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaactgcttcattctcttcctattgaaa |
444645 |
T |
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| Q |
201 |
catacattcattgaattaaaaactcgggaaaactaatattataatttccttgaatctaaaggccaaatgatatgggaaaatatagtagtaattcacaaac |
300 |
Q |
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| T |
444644 |
catacattcattgaattaaaaactcgggaaaactaatattataatttccttg-atctaaaggccaaatgatatgggaaaatatagtaataattcacaaac |
444546 |
T |
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| Q |
301 |
ctgtagcatcttaaacatgacacgctgaagtttttgggtcttgattacagccggtctttttaggcgccttatgtt |
375 |
Q |
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| T |
444545 |
ctgtagcatcttaaacatgacactctgaagtttttgggtcttgattacagccggtctttttaggcgccttatgtt |
444471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 465373 - 465510
Alignment:
| Q |
82 |
aaagaagctgtgcaagtagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaactgctt |
181 |
Q |
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| T |
465373 |
aaagaggcggtgcaaattgcatttgctgttttttcatcaaaccacacttccctcttgtaaagcttccacagaatcacaagcactctcatggcaactgcat |
465472 |
T |
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| Q |
182 |
cattctcttcctattgaaacatacattcattgaattaa |
219 |
Q |
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| T |
465473 |
ctttcgcttcctattcaaaaacacatgaattgaattaa |
465510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 443539 - 443455
Alignment:
| Q |
91 |
gtgcaagtagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaa |
175 |
Q |
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| T |
443539 |
gtgcaaattgcatttgctgttttttcatcaaaccacactttcctctggtaaagctcccacagagtcacaagcactctcttggcaa |
443455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 442754 - 442711
Alignment:
| Q |
287 |
agtaattcacaaacctgtagcatcttaaacatgacacgctgaag |
330 |
Q |
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| T |
442754 |
agtaattgacaaacctgtagcatcttaaacataacactctgaag |
442711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 466926 - 466991
Alignment:
| Q |
275 |
ggaaaatatagtagtaattcacaaacctgtagcatcttaaacatgacacgctgaagtttttgggtc |
340 |
Q |
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| T |
466926 |
ggaaaacaaagtaggaattcacaaaccagtagcatgttaaacatgagagtctgaagttttcgggtc |
466991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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