View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18541_low_5 (Length: 368)
Name: NF18541_low_5
Description: NF18541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18541_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 90 - 351
Target Start/End: Original strand, 38792128 - 38792391
Alignment:
| Q |
90 |
gccaatcatcaccggaacaaccaatcatgcagaccctcatgtcgtgactgcagaaaatcagacaacagttcaaactaaaaacatcgtaacgacaatgtaa |
189 |
Q |
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| T |
38792128 |
gccaatcatcaccggaacaaccaatcatgcagactctcatgtcgtgactgcagaaaaccagacaacagttcaaactaaaaacatcgtaacgacaatgtaa |
38792227 |
T |
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| Q |
190 |
tcttggcttttgatgtctggatcattcaac--ttgtgtctctatgatgattatgttgattttcatatcctacaaagagagacaaagaggttgtattcccg |
287 |
Q |
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||||||||||||||| |||||||||||||| || | | ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38792228 |
tcttggcttttgatggctggatcattcaacagttcaaac-caatgatgattgtgttgattttcatatcctacaaagagaggtaaagaggttgtattcccg |
38792326 |
T |
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| Q |
288 |
catagtaaaaaa-caacatgttgtatttccatcaataagaaaacttcaaaccaacacctgtaata |
351 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38792327 |
catagtaaaaaaccaacatgttgtatttccatcaataagaaaacttcaaaccaacacctgtaata |
38792391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 407932 - 407991
Alignment:
| Q |
187 |
taatcttggcttttgatgtctggatcattcaacttgtgtctctatgatgattatgttgat |
246 |
Q |
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| T |
407932 |
taatcttggcttttgatggctggatcattcaacttatgtctctgtgatgattgtgttgat |
407991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 416010 - 415951
Alignment:
| Q |
187 |
taatcttggcttttgatgtctggatcattcaacttgtgtctctatgatgattatgttgat |
246 |
Q |
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| T |
416010 |
taatcttggcttttgatggctggatcattcaacttatgtctctgtgatgattgtgttgat |
415951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 6457721 - 6457759
Alignment:
| Q |
196 |
cttttgatgtctggatcattcaacttgtgtctctatgat |
234 |
Q |
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||||||||| ||||||||||||||||| ||||||||||| |
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| T |
6457721 |
cttttgatggctggatcattcaacttgcgtctctatgat |
6457759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 49962806 - 49962756
Alignment:
| Q |
196 |
cttttgatgtctggatcattcaacttgtgtctctatgatgattatgttgat |
246 |
Q |
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||||||||| ||||||||||||||||| ||||||| ||| ||| ||||||| |
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| T |
49962806 |
cttttgatggctggatcattcaacttgcgtctctaagattattgtgttgat |
49962756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 24184414 - 24184473
Alignment:
| Q |
187 |
taatcttggcttttgatgtctggatcattcaacttgtgtctctatgatgattatgttgat |
246 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||||||| |
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| T |
24184414 |
taatcttggcttttgatggctggatcattcaacttatgtctctgtgatgattgtgttgat |
24184473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 24357865 - 24357806
Alignment:
| Q |
187 |
taatcttggcttttgatgtctggatcattcaacttgtgtctctatgatgattatgttgat |
246 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||||||| |
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| T |
24357865 |
taatcttggcttttgatggctggatcattcaacttatgtctctgtgatgattgtgttgat |
24357806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 24345592 - 24345535
Alignment:
| Q |
187 |
taatcttggcttttgatgtctggatcattcaacttgtgtctctatgatgattatgttgat |
246 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||| |||||||| ||||||| |
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| T |
24345592 |
taatcttggcttttgatggctggatcattcaacttatgtctc--tgatgattgtgttgat |
24345535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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