View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18541_low_6 (Length: 310)
Name: NF18541_low_6
Description: NF18541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18541_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 294
Target Start/End: Original strand, 11873022 - 11873307
Alignment:
| Q |
9 |
ttattctcaaagttaaacaacatatatacctcaaatcaaatcaatgaaacatttaacttagaaaattttcattagattaagtgtttctaaataatcttcc |
108 |
Q |
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| T |
11873022 |
ttattctcaaagttaaacaacatatatacctcaaatcaaatcaatgaaatatttaacttagaaaattttcattagtttaagtgtttctaaataatcttcc |
11873121 |
T |
|
| Q |
109 |
aaagtagtgccacatacctccaactttcccatggatgcggaaacattgacaacttttggtgagcttgaaagctggagaaatggaataagggcttctgtca |
208 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11873122 |
aaagcagtgccacatacctccaactttcccatggatgcggaaacattgacaacttttggtgagcttgaaagctggagaaatggaataagggcttctgtca |
11873221 |
T |
|
| Q |
209 |
agtcctttgctccatagtagtttgttttaatacctaattcagtttgttcataggtttgagttattattttactccaatcaatctgg |
294 |
Q |
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| T |
11873222 |
agtcctttgctccatagtagtttgttttaatacctaattcagtttgttcataggtttgagttattattttactccaatcaatctgg |
11873307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 294
Target Start/End: Original strand, 11866415 - 11866699
Alignment:
| Q |
8 |
attattctcaaagttaaacaacatatatacctcaaatcaaatcaatgaaacatttaacttagaaaattttcattagattaagtgtttctaaataatcttc |
107 |
Q |
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|||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| || |||||||||||||||| |||||| ||| |||| | |||| |
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| T |
11866415 |
attattctcaaagtcaaacaacatatatacttcagatcaaatcaatgaaacatttatctcagaaaattttcattagtttaagt--ttccaaattagcttc |
11866512 |
T |
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| Q |
108 |
caaagtagtgccacatacctccaactttcccatggatgcggaaacattgacaacttttggtgagcttgaaagctggagaaatggaataagggcttctgtc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || |
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| T |
11866513 |
caaagtagtgccacatacctccaactttcccatggatgaggaaacattgacaacttttggtgagcttgaaagctggagaaggggaataaatgcttcagtt |
11866612 |
T |
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| Q |
208 |
aagtcctttgctccatagtagtttgttttaatacctaattcagtttgttcataggtttgagttattattttactccaatcaatctgg |
294 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11866613 |
aagtccttggctccataatagtttgttttaatacctaattcagtttgttcatatgtttgagttattattttactccaatcaatctgg |
11866699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 122 - 294
Target Start/End: Original strand, 11877839 - 11878011
Alignment:
| Q |
122 |
atacctccaactttcccatggatgcggaaacattgacaacttttggtgagcttgaaagctggagaaatggaataagggcttctgtcaagtcctttgctcc |
221 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| ||||| |
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| T |
11877839 |
atacctccaactttcccatggatgaggaaacattgacaacttttggtgagcttgaaagctggagaaggggaataagtgcttcagttaagtccttggctcc |
11877938 |
T |
|
| Q |
222 |
atagtagtttgttttaatacctaattcagtttgttcataggtttgagttattattttactccaatcaatctgg |
294 |
Q |
| |
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||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
11877939 |
ataatagtttgttttaatacctaattcagtttcttcatatgtttgagttattattttactccaatcaatctgg |
11878011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 122 - 294
Target Start/End: Original strand, 11892846 - 11893018
Alignment:
| Q |
122 |
atacctccaactttcccatggatgcggaaacattgacaacttttggtgagcttgaaagctggagaaatggaataagggcttctgtcaagtcctttgctcc |
221 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| ||||| |
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| T |
11892846 |
atacctccaactttcccatggatgaggaaacattgacaacttttggtgagcttgaaagctggagaaggggaataagtgcttcagttaagtccttggctcc |
11892945 |
T |
|
| Q |
222 |
atagtagtttgttttaatacctaattcagtttgttcataggtttgagttattattttactccaatcaatctgg |
294 |
Q |
| |
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||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
11892946 |
ataatagtttgttttaatacctaattcagtttcttcatatgtttgagttattattttactccaatcaatctgg |
11893018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 122 - 294
Target Start/End: Original strand, 11895255 - 11895427
Alignment:
| Q |
122 |
atacctccaactttcccatggatgcggaaacattgacaacttttggtgagcttgaaagctggagaaatggaataagggcttctgtcaagtcctttgctcc |
221 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| ||||| |
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| T |
11895255 |
atacctccaactttcccatggatgaggaaacattgacaacttttggtgagcttgaaagctggagaaggggaataagtgcttcagttaagtccttggctcc |
11895354 |
T |
|
| Q |
222 |
atagtagtttgttttaatacctaattcagtttgttcataggtttgagttattattttactccaatcaatctgg |
294 |
Q |
| |
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||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
11895355 |
ataatagtttgttttaatacctaattcagtttcttcatatgtttgagttattattttactccaatcaatctgg |
11895427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 190 - 290
Target Start/End: Complemental strand, 11915790 - 11915690
Alignment:
| Q |
190 |
ggaataagggcttctgtcaagtcctttgctccatagtagtttgttttaatacctaattcagtttgttcataggtttgagttattattttactccaatcaa |
289 |
Q |
| |
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|||||||| ||||| ||||||||||| |||||||| |||||||| ||||||| | || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11915790 |
ggaataagtgcttcggtcaagtccttgcctccatagaagtttgttctaataccaacttaagtttgttcataggtttgagttattattttactccaatcaa |
11915691 |
T |
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| Q |
290 |
t |
290 |
Q |
| |
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| |
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|
| T |
11915690 |
t |
11915690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 190 - 290
Target Start/End: Original strand, 11938419 - 11938519
Alignment:
| Q |
190 |
ggaataagggcttctgtcaagtcctttgctccatagtagtttgttttaatacctaattcagtttgttcataggtttgagttattattttactccaatcaa |
289 |
Q |
| |
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|||||||| ||||| ||||||||||| |||||||| |||||||| ||||||| | || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11938419 |
ggaataagtgcttcggtcaagtccttgcctccatagaagtttgttctaataccaacttaagtttgttcataggtttgagttattattttactccaatcaa |
11938518 |
T |
|
| Q |
290 |
t |
290 |
Q |
| |
|
| |
|
|
| T |
11938519 |
t |
11938519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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