View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18541_low_8 (Length: 261)
Name: NF18541_low_8
Description: NF18541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18541_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6214494 - 6214253
Alignment:
| Q |
1 |
tgttcccataacctcaacaaagtattcaataaattccttaaaactacctgtacatacagcatggcgtccatggtacactggaaaagaggtaaagaaacat |
100 |
Q |
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| T |
6214494 |
tgttcccataatctcaacaaagtattcaataaattccttaaaactacatgtacgtacagcatggcgtccatggtacactggaaaagaggtaaagaaacat |
6214395 |
T |
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| Q |
101 |
taatatatatcactattacaatatatactaattaagaactttaagccacttatagataacctactacattattatatatgcaggttggaggatatgtgat |
200 |
Q |
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| T |
6214394 |
taatatatatcactattacaatatatactaattaagaactttaagccacttatagataacctactacattattatatatgcaggttggagggtatgtgat |
6214295 |
T |
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| Q |
201 |
tggttacaaagggctcacactagtcactgtaagaggagctgg |
242 |
Q |
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| T |
6214294 |
tggttacaaagggctcacactaatcactgtaagaggagctgg |
6214253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 6206798 - 6206706
Alignment:
| Q |
1 |
tgttcccataacctcaacaaagtattcaataaattccttaaaactacctgtacatacagcatggcgtccatggtacactggaaaagaggtaaa |
93 |
Q |
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| T |
6206798 |
tgttcccataacctcaacaaagtattcaataaattccttaaaactgcctgtgcatacagcatggcgtccatggtacactggaaaagaggtaaa |
6206706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 6176988 - 6176895
Alignment:
| Q |
1 |
tgttcccataacctcaacaaagtattcaataaattccttaaaactacctgtacatacagcatggcgtccatggtacactggaaaagaggtaaag |
94 |
Q |
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| T |
6176988 |
tgttcctataacctcaacaaagtattcaataaattccttaaaactgcctgtgcatacagcatggcgtccatggtacactggaaaagaggtaaag |
6176895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 6206569 - 6206502
Alignment:
| Q |
176 |
atatgcaggttggaggatatgtgattggttacaaagggctcacactagtcactgtaagaggagctgga |
243 |
Q |
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| T |
6206569 |
atatgcaggttggagggtatgtgattggttacaaagggctcacactagtcactgtaagaggagctgga |
6206502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 6176756 - 6176689
Alignment:
| Q |
176 |
atatgcaggttggaggatatgtgattggttacaaagggctcacactagtcactgtaagaggagctgga |
243 |
Q |
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| T |
6176756 |
atatgcaggttggaggatatgtgattggttacaaagggctcgcacttgttactgttagaggagctgga |
6176689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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