View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18541_low_9 (Length: 260)
Name: NF18541_low_9
Description: NF18541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18541_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 43434186 - 43433952
Alignment:
| Q |
19 |
aattgagcatacatacatattaggagtcaacacggtgtctgcatttatcactagtgttactttatcgtccaatccattcctcacatggatttttcctgtt |
118 |
Q |
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| T |
43434186 |
aattgagcatacatacatattaggagtcaacacggtgtctgcatttatcactagtgttactttaccgtccaatccattcctcacatggatttttcctgtt |
43434087 |
T |
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| Q |
119 |
aaaaacaaaaggaacagttaagacacttgaatttaggcataatgtaggtatcactatctgtctctttctgttgagcgtgcacgtttcttagaccaatctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43434086 |
aaaaacaaaaggaacagttaagacacttgaatttaggcataatgtaggtatcactatctgtctctttccgttgagcgtgcacgtttcttagaccaatctc |
43433987 |
T |
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| Q |
219 |
aaagttaaatgcttgctattgctaaccctttgctt |
253 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
43433986 |
aaagttaaatgcttgctattgctaaccctttgctt |
43433952 |
T |
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