View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18542_high_12 (Length: 237)
Name: NF18542_high_12
Description: NF18542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18542_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 50528644 - 50528872
Alignment:
| Q |
1 |
actacacaaatcccctgatcaaatctcagccagaggctatattgttgaagtgggtccctttcctttgtgaaagattgtgaataccattcagaaaacacta |
100 |
Q |
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| T |
50528644 |
actacacaaatcccctgatcaaatctcagccagaggctatattgttgaagtgggtccttttcctttgtgaaagattgtgaataccattcagaaaacacta |
50528743 |
T |
|
| Q |
101 |
atcccagacaatattcacatcaca----ccatccacacacgttgccaaggaattaaaaacacagcaatcaaaaaacata----tacttacttagacatga |
192 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50528744 |
atcccagacaatattcacatcacaccatccatccacacacgttgccaaggaattaaaaacacagcaatcaaaaaacatatacttacttacttagacatga |
50528843 |
T |
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| Q |
193 |
aaaaccttatataattaagaggaagcaag |
221 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
50528844 |
aaaaccttatataattaagaggaagcaag |
50528872 |
T |
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