View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18542_high_4 (Length: 373)

Name: NF18542_high_4
Description: NF18542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18542_high_4
NF18542_high_4
[»] chr5 (3 HSPs)
chr5 (70-150)||(26839227-26839307)
chr5 (293-355)||(26839478-26839540)
chr5 (149-179)||(26839338-26839368)
[»] chr8 (1 HSPs)
chr8 (1-71)||(10027411-10027481)
[»] scaffold0712 (1 HSPs)
scaffold0712 (1-71)||(2319-2389)
[»] scaffold0709 (1 HSPs)
scaffold0709 (1-71)||(2339-2409)
[»] chr4 (3 HSPs)
chr4 (1-71)||(36692957-36693027)
chr4 (70-150)||(50974322-50974402)
chr4 (293-355)||(50974577-50974639)


Alignment Details
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 26839227 - 26839307
Alignment:
Q  70 agtcggaattggtgactgattcagttgcggtgccacagagatgcaaatggtctttgttggagctgtttttgttgaagcagt 150  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26839227 agtcggaatcggtgactgattcagttgcggtgccacagagatgcaaatggtctttgttggagctgtttttgttgaagcagt 26839307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 26839478 - 26839540
Alignment:
Q  293 tggtggaggaaatcaatatccctacagaaactaagtcgttacagaacatttgaattgaatagt 355  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26839478 tggtggaggaaatcaaaatccctacagaaactaagtcgttacagaacatttgaattgaatagt 26839540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 179
Target Start/End: Original strand, 26839338 - 26839368
Alignment:
Q  149 gtgtcaagttgtttggttattccaccatccc 179  Q
    |||||||||||||||||||||||||||||||    
T  26839338 gtgtcaagttgtttggttattccaccatccc 26839368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 10027411 - 10027481
Alignment:
Q  1 aatgcaagaagataaattttcgagatcaaagaaattcaagaaagttgtaaactgtaatctactctcaaaag 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10027411 aatgcaagaagataaattttcgagatcaaagaaattcaagaaagttgtaaactgtaatctactctcaaaag 10027481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 2319 - 2389
Alignment:
Q  1 aatgcaagaagataaattttcgagatcaaagaaattcaagaaagttgtaaactgtaatctactctcaaaag 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2319 aatgcaagaagataaattttcgagatcaaagaaattcaagaaagttgtaaactataatctactctcaaaag 2389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 2339 - 2409
Alignment:
Q  1 aatgcaagaagataaattttcgagatcaaagaaattcaagaaagttgtaaactgtaatctactctcaaaag 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2339 aatgcaagaagataaattttcgagatcaaagaaattcaagaaagttgtaaactataatctactctcaaaag 2409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 36692957 - 36693027
Alignment:
Q  1 aatgcaagaagataaattttcgagatcaaagaaattcaagaaagttgtaaactgtaatctactctcaaaag 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36692957 aatgcaagaagataaattttcgagatcaaagaaattcaagaaagttgtaaactttaatctactctcaaaag 36693027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 50974322 - 50974402
Alignment:
Q  70 agtcggaattggtgactgattcagttgcggtgccacagagatgcaaatggtctttgttggagctgtttttgttgaagcagt 150  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||    
T  50974322 agtcggaatcggtgactgattcagttgcggtgccagagagatgcaaatggtctttgttggagctgttttccttgaagcagt 50974402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 50974577 - 50974639
Alignment:
Q  293 tggtggaggaaatcaatatccctacagaaactaagtcgttacagaacatttgaattgaatagt 355  Q
    ||||||||||||| || ||| ||||  ||||||| |||||||||||||||||||||| |||||    
T  50974577 tggtggaggaaattaacatctctacgtaaactaaatcgttacagaacatttgaattgcatagt 50974639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University