View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18542_low_1 (Length: 522)
Name: NF18542_low_1
Description: NF18542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18542_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 266 - 492
Target Start/End: Original strand, 37408786 - 37409012
Alignment:
| Q |
266 |
aactttttaaacttaaggactcacaaaaaactcaagacaatgctcatattctttcttgtctatgcacttcaagttcattaaagtacgcagttacaacgag |
365 |
Q |
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| T |
37408786 |
aactttttaaacttaaggactcacaaaaaactcaagacaatgctcatattctttcttgtctatgcacttcaagttcattaaagtacgcagttacaacgag |
37408885 |
T |
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| Q |
366 |
acagatttagagccaaacctcgcaatgcactcttccacattttgcacaattgagcttgttgcatggattatatatggatggtctgtctgactctgaccaa |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37408886 |
acagatttagagccaaacctcgcaatgcactcttccacattttgcacaattgagcttgttgcatggattatatatggatggtctgtctgactctgaccaa |
37408985 |
T |
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| Q |
466 |
tctatgattgactgctgtatcatcttc |
492 |
Q |
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| T |
37408986 |
tctatgattgactgctgtatcatcttc |
37409012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 37408597 - 37408790
Alignment:
| Q |
19 |
acctcagtatttttgtgggacttacattctcttgcaaaagcaaaaacaaccatagttcttaaagcacctccaattacgcaacctttcgcgatggcttgag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37408597 |
acctcagtatttttgtgggacttacattctcttgcaaaagcaaaaacaaccatagttcttaaagcacctccaattacgcaacctttcgcgatggcttgag |
37408696 |
T |
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| Q |
119 |
tggccttcacaatgtcacgtgaatctaaaacaatcaattcattatttactttaatcatgcaactttaaaaaacgcatattcgatcccacaactt |
212 |
Q |
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| T |
37408697 |
tggccttcacaatgtcacatgaatctaaaacaatcaattcattatttacttcaatcatgcaactttaaaaaacacatattcgaacccacaactt |
37408790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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