View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18542_low_11 (Length: 241)
Name: NF18542_low_11
Description: NF18542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18542_low_11 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 43 - 241
Target Start/End: Original strand, 50528452 - 50528650
Alignment:
| Q |
43 |
tttgcaatcgcagtgatttttacaaaattacaatggcaccctaattttgttgaagctataaattatagtttttgctaactataagatacacactcaatcg |
142 |
Q |
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| T |
50528452 |
tttgcattcgcagtgatttttacaaaattacactggcaccctaattttgttgaagctataaattatagtttttgctaactataagatacacactcaatcg |
50528551 |
T |
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| Q |
143 |
gcttcataatgaaggtgacaatgtggagagctacactgaacccattcacactaatgaggaaacataaaatcttatcacaatccagcagaataactacac |
241 |
Q |
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| T |
50528552 |
gcttcataatgaaggtgacaatgtggagagctacactgaacccattcacactaatgaggaaacataaaatcttatcacaatccagcagaataactacac |
50528650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 50528370 - 50528410
Alignment:
| Q |
3 |
aatactaaatctctatcaaaagaggtaccacatttggtgct |
43 |
Q |
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| T |
50528370 |
aatactaaatctctatcaaaagaggtaccacatttggtgct |
50528410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 116
Target Start/End: Complemental strand, 45608406 - 45608376
Alignment:
| Q |
86 |
attttgttgaagctataaattatagtttttg |
116 |
Q |
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| T |
45608406 |
attttgttgaagctataaattatagtttttg |
45608376 |
T |
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