View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18542_low_2 (Length: 519)
Name: NF18542_low_2
Description: NF18542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18542_low_2 |
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| [»] scaffold0765 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 28997668 - 28997183
Alignment:
| Q |
1 |
ccaaacctaatttctgtttannnnnnngggtctgtgacatttctccctcttctcatcttcttcatatcttcttcaacaacaccaacatatctagaattac |
100 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
28997668 |
ccaaacctaatttctgtttatttttttgggtctg--acatttctccctcttctcatcttcttcatgtcttcttcaacaacaccaacagatctagaattac |
28997571 |
T |
|
| Q |
101 |
aaatagcatctcttttacactaggtaagtgaacctttggatccttcattagaacacaaacagtgaagcatgttaccactgaactcatatttattaatctc |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28997570 |
aaatagaatctcttttacactaggtaagtgaacctttggatccttcattagaacacaaacagtgaagcatgttaccacttaactcatatttattaatctc |
28997471 |
T |
|
| Q |
201 |
taaacaagtgtaaacccatttaatcttctggtgtcaattaagttagtggaaagggataagagggtatcagattgagttttgttgnnnnnnnnggtgggat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || |
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| T |
28997470 |
taaacaagtgtaaacccatttaatcttctggtgtcatttaagttagtggaaagggagaagagggtatcagattgagttttgttgaaaaaaaaggtggaat |
28997371 |
T |
|
| Q |
301 |
tggagggtctggtgatggtacaagagtggattgattagtgaattgaaagcattaatttattggttgaagcttttcattactgtattggaaaagataatta |
400 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
28997370 |
tggagggtccggtgatggtgcaagagtggattgattagtgaattgaaagcattactttgttggttgaagcttttcgttactgtattggaaaagataatta |
28997271 |
T |
|
| Q |
401 |
atttgaatttgggtttgattgaatttggagaagttgactaaatttaaatttgggtttgatttgtcactaatctgggtttgtttaaaga |
488 |
Q |
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| T |
28997270 |
atttgaatttgggtttgattgaatttggagaagttgactaaatttgaatttgggtttgatttgtcactaatttgggtttgtttgaaga |
28997183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 29 - 373
Target Start/End: Complemental strand, 1420125 - 1419785
Alignment:
| Q |
29 |
ggtctgtgacatttctccctcttctcatcttcttcatatcttcttcaacaacaccaacatatctagaattacaaatagcatctcttttacactaggtaag |
128 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||| |
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| T |
1420125 |
ggtctgtgacatttctccctcttctcatcttcttcatgtcttcttcaacaacaccaacagatttagaattacaaatagcatctcttttacagtaggtaag |
1420026 |
T |
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| Q |
129 |
tgaacctttggatccttc-----attagaacacaaacagtgaagcatgttaccactgaactcatatttattaatctctaaacaagtgtaaacccatttaa |
223 |
Q |
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| T |
1420025 |
tgaacctttggatcctccattatattagaacacaaacagtgaaacatgtttccacttaacccatctttattaatctctaaacaagtgtaaactcatttac |
1419926 |
T |
|
| Q |
224 |
tcttctggtgtcaattaagttagtggaaagggataagagggtatcagattgagttttgttgnnnnnnnnggtgggattggagggtctggtgatggtacaa |
323 |
Q |
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| || ||||||| ||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||| |||||||||| ||| |
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| T |
1419925 |
tattatggtgtcgtttaagttagtggaaagggagaagagggt---------agttttgttgaagaaaaaggtggaattggagggtgtggtgatggtgcaa |
1419835 |
T |
|
| Q |
324 |
gagtggattgattagtgaattgaaagcattaatttattggttgaagcttt |
373 |
Q |
| |
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|||||||||||||||| |||||||||||||| ||| |||||||||||||| |
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| T |
1419834 |
gagtggattgattagtaaattgaaagcattactttgttggttgaagcttt |
1419785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0765 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: scaffold0765
Description:
Target: scaffold0765; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 108 - 488
Target Start/End: Complemental strand, 2589 - 2209
Alignment:
| Q |
108 |
atctcttttacactaggtaagtgaacctttggatccttcattagaacacaaacagtgaagcatgttaccactgaactcatatttattaatctctaaacaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2589 |
atctcttttacactaggtaagtgaacctttggatccttcattagaacacaaacagtgaagcatgttaccacttaactcatatttattaatctctaaacaa |
2490 |
T |
|
| Q |
208 |
gtgtaaacccatttaatcttctggtgtcaattaagttagtggaaagggataagagggtatcagattgagttttgttgnnnnnnnnggtgggattggaggg |
307 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
2489 |
gtgtaaacccatttaatcttctggtgtcatttaagttagtggaaagggagaagagggtatcagattgagttttgttgaaaaaaaaggtggaattggaggg |
2390 |
T |
|
| Q |
308 |
tctggtgatggtacaagagtggattgattagtgaattgaaagcattaatttattggttgaagcttttcattactgtattggaaaagataattaatttgaa |
407 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2389 |
tctggtgatggtgcaagagtggattgattagtgaattgaaagcattactttgttggttgaagcttttcattactgtattggaaaagataattaatttgaa |
2290 |
T |
|
| Q |
408 |
tttgggtttgattgaatttggagaagttgactaaatttaaatttgggtttgatttgtcactaatctgggtttgtttaaaga |
488 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
2289 |
tttgggtttgattgaatttggagaagttgactaaatttgaatttgggtttgatttgtcactaatttgggtttgtttgaaga |
2209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 35 - 209
Target Start/End: Complemental strand, 48692240 - 48692060
Alignment:
| Q |
35 |
tgacatttctccctcttctcatcttcttcatatcttcttcaacaaca------ccaacatatctagaattacaaatagcatctcttttacactaggtaag |
128 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||| ||||||||||||||||||| |||| |||||||||| |
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| T |
48692240 |
tgacatttctccctcttctcatcttcttcatgtcttcttcaacaacaactacaccaacagatctggaattacaaatagcatctcctttatactaggtaag |
48692141 |
T |
|
| Q |
129 |
tgaacctttggatccttcattagaacacaaacagtgaagcatgttaccactgaactcatatttattaatctctaaacaagt |
209 |
Q |
| |
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|||||||||||||||| | |||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||| |||||| |
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| T |
48692140 |
tgaacctttggatcctcctttagaacataaacagtgaagcatgttaccacttaacccatctttattaatctctatacaagt |
48692060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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