View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18542_low_5 (Length: 349)
Name: NF18542_low_5
Description: NF18542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18542_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 31028699 - 31028364
Alignment:
| Q |
1 |
caatatcaagaatcaggacaacacgcagaattaagacacaattaaaatacttgttctttctaatcatgcaaataaatataattcaatcactaatcccaaa |
100 |
Q |
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| T |
31028699 |
caatatcaagaatcaggacgacacgcagaattaagacacaattaaaatacttgttctttctaatcatgcaaataaatataattcaatcactaa-ccaaaa |
31028601 |
T |
|
| Q |
101 |
attaagtatgactaataataactatggcaaatccaatacacattnnnnnnnnnnnnnnnnnnnnnnnnncatcgtgagcgtatgaaacaacaagaataac |
200 |
Q |
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| T |
31028600 |
attaagtatgactaataataactatggcaaatccaatacacattaaaaataaaataaaaaagagaaaaacatcgtgagcgtatgaaacaagaagaataac |
31028501 |
T |
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| Q |
201 |
aaaaatatggaacaggaaaaagacaaaccagcgagaatagtgcgaccaggagcagaaacaaaagtaggagggtgaccaataacaacaataggtttcaaat |
300 |
Q |
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| T |
31028500 |
aaaaatatggaacaggaaaaagacaaaccagcgagaatagtgcgaccaggagcagaaacaaaagtaggagggtgaccaataacaacaataggtttcaaat |
31028401 |
T |
|
| Q |
301 |
tagttgatgttgttttaaggttattactatgaatatt |
337 |
Q |
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| T |
31028400 |
tacttgatgttgttttaaggctattactatgaatatt |
31028364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 31015881 - 31015829
Alignment:
| Q |
202 |
aaaatatggaacaggaaaaagacaaaccagcgagaatagtgcgaccaggagca |
254 |
Q |
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||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| |
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| T |
31015881 |
aaaatatggaacaagaaaaagacaaaccagcaagaattgtgcgaccaggagca |
31015829 |
T |
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