View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18542_low_8 (Length: 253)
Name: NF18542_low_8
Description: NF18542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18542_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 32470851 - 32471018
Alignment:
| Q |
22 |
aagggtatttgtagtgtggtttagatcaattttaaagtaaaaaagcatttgatccaaaggaaaaaataatgttcaatcttaatgggtagaactgtcctta |
121 |
Q |
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| T |
32470851 |
aagggtatttgtagtgtggtttagatcaattttaaagtaaaaaagcatttcatccaaaggaaaaaataatgttcaatcttaatgggtagaagtgtccata |
32470950 |
T |
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| Q |
122 |
tttaatagtcgatacagctcaaataagaatatannnnnnngttacatttcctcaaataagaatcactg |
189 |
Q |
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| T |
32470951 |
tttaatagttgatacagctcaaataagaatatttttttttgttacattttctcaaataagaatcactg |
32471018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 32502354 - 32502484
Alignment:
| Q |
22 |
aagggtatttgtagtgtggtttagatcaattttaaagtaaaaaagcatttgatccaaaggaaaaaataatgttcaatcttaatgggtagaactgtcctta |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| || |
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| T |
32502354 |
aagggtatttgtagtgtggtttagatcaattttaaagtaaaaaagcatttcatccaaaggaaaaaataatgttcaatcttaatggatagaagtgtccata |
32502453 |
T |
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| Q |
122 |
tttaatagtcgatacagctcaaataagaata |
152 |
Q |
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| T |
32502454 |
tttaatagttgatacagcttaaataagaata |
32502484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 238
Target Start/End: Original strand, 32471044 - 32471075
Alignment:
| Q |
207 |
ataatacaaaataataagaggccttctaacat |
238 |
Q |
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| T |
32471044 |
ataatacaaaataataagaggccttctaacat |
32471075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 238
Target Start/End: Original strand, 32502513 - 32502544
Alignment:
| Q |
207 |
ataatacaaaataataagaggccttctaacat |
238 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
32502513 |
ataatacaaaataataagaggccttctaacat |
32502544 |
T |
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