View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18542_low_9 (Length: 248)
Name: NF18542_low_9
Description: NF18542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18542_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 8830629 - 8830875
Alignment:
| Q |
1 |
caaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaacaaactagccaactcaaagcacaaaaacagtgaa |
100 |
Q |
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| T |
8830629 |
caaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaacaaactagccaactcaaagcacaaaaacagtgaa |
8830728 |
T |
|
| Q |
101 |
taaatacaaatcaagtaacaaaaatagcatatctagaaatcctaaagcaacaaacttgccaaatcaagaaaaaacaaacaacaaattatgaaggagaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8830729 |
taaatacaaatcaagtaacaaaaatagcatatcttgaaatcctaaagcaaaaaacttgccaaatcaagaaaaaacaaacaacaaattatgaaggagaatg |
8830828 |
T |
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| Q |
201 |
tgtgtgaaagagcagaagcagcatagaaggagtggacggcatagaca |
247 |
Q |
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| T |
8830829 |
tgtgtgaaagagcagaagcagcatagaaggagtggacggcatagaca |
8830875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 43910260 - 43910199
Alignment:
| Q |
2 |
aaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaag |
63 |
Q |
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| T |
43910260 |
aaaacaataagtcggtggcttgatttgttcaaactaaacagtgaagaaatagcaaaatcaag |
43910199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 44002830 - 44002899
Alignment:
| Q |
1 |
caaaacaataagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaacaaa |
70 |
Q |
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| T |
44002830 |
caaaacagtaagtcactgactagatttgttcaagcaaaacagtgaagaaatagccaaatcaagcaacaaa |
44002899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 43984844 - 43984891
Alignment:
| Q |
23 |
gatttgttcagacaaaacagtgaagaaatagccaaatcaagcaacaaa |
70 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43984844 |
gatttgttcaaacaaaacagtgaagaaatagccaaatcaagcaacaaa |
43984891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 43918891 - 43918835
Alignment:
| Q |
10 |
aagtcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaa |
66 |
Q |
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||||||||||||| ||||||| | |||||| |||||||||||||||||||||||||| |
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| T |
43918891 |
aagtcagtggcttcatttgtttaaacaaaagagtgaagaaatagccaaatcaagcaa |
43918835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 43989108 - 43989274
Alignment:
| Q |
13 |
tcagtggcttgatttgttcagacaaaacagtgaagaaatagccaaatcaagcaacaaactagccaactcaaagcacaaaaacagtgaataaatacaaatc |
112 |
Q |
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||||||||| ||||||| | |||||| |||||||||||||||||||||| ||||||||||||||| |||| ||| |||| ||||| ||| ||||| | |
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| T |
43989108 |
tcagtggctacatttgttaa-acaaaagagtgaagaaatagccaaatcaa-caacaaactagccaaatcaagacac-aaaatagtgagcaaagacaaaac |
43989204 |
T |
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| Q |
113 |
aagtaacaaaa-atagcatatctagaaatcctaaagcaacaaacttgccaaatcaagaaaaaacaaacaacaaa |
185 |
Q |
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||| ||||||| |||| | || | || | ||||||||||||||| || ||||||||||| |||||||||| |
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| T |
43989205 |
aagaaacaaaatataggagattt----atattgaagcaacaaacttgcgaattcaagaaaaaataaacaacaaa |
43989274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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