View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18543_high_14 (Length: 243)

Name: NF18543_high_14
Description: NF18543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18543_high_14
NF18543_high_14
[»] chr8 (4 HSPs)
chr8 (36-145)||(27837351-27837460)
chr8 (184-230)||(27837266-27837312)
chr8 (1-38)||(14632964-14633001)
chr8 (1-38)||(20469927-20469964)
[»] chr2 (2 HSPs)
chr2 (1-40)||(45271388-45271427)
chr2 (1-38)||(43374479-43374516)
[»] chr5 (3 HSPs)
chr5 (1-38)||(7151335-7151372)
chr5 (1-38)||(12398602-12398639)
chr5 (1-38)||(19456363-19456400)
[»] chr4 (1 HSPs)
chr4 (1-38)||(7392117-7392154)
[»] chr3 (2 HSPs)
chr3 (1-38)||(10083973-10084010)
chr3 (1-38)||(10190896-10190933)
[»] chr6 (1 HSPs)
chr6 (1-35)||(28968196-28968230)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 27837460 - 27837351
Alignment:
Q  36 gttcacaacaccacacttaaaacaaaaaagctttgtctaattgaaagagaaaatcaagaaaaagctaagaacatgatttatgaactcattgtaagatcct 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27837460 gttcacaacaccacacttaaaacaaaaaagctttgtctaattgaaagagaaaatcaagaaaaagctaagaacatgatttatgaactcattgtaaaatcct 27837361  T
Q  136 cgcgaagttc 145  Q
    |  |||||||    
T  27837360 caagaagttc 27837351  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 27837312 - 27837266
Alignment:
Q  184 caactcggaggttaaatgttgcttcttaaccacccttgagttcaacc 230  Q
    ||||||||||||||||| || |||||||||| |||||||||||||||    
T  27837312 caactcggaggttaaattttacttcttaaccccccttgagttcaacc 27837266  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14633001 - 14632964
Alignment:
Q  1 agcaaactctaagatcccaagccaaccccaaatgggtt 38  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  14633001 agcaaactccaagatcccaagccaaccccaaatgggtt 14632964  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20469964 - 20469927
Alignment:
Q  1 agcaaactctaagatcccaagccaaccccaaatgggtt 38  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  20469964 agcaaactccaagatcccaagccaatcccaaatgggtt 20469927  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45271427 - 45271388
Alignment:
Q  1 agcaaactctaagatcccaagccaaccccaaatgggttca 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45271427 agcaaactctaagatcccaagccaaccccaaatgggttca 45271388  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43374479 - 43374516
Alignment:
Q  1 agcaaactctaagatcccaagccaaccccaaatgggtt 38  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  43374479 agcaaactccaagatcccaagccaaccccaaatgggtt 43374516  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7151372 - 7151335
Alignment:
Q  1 agcaaactctaagatcccaagccaaccccaaatgggtt 38  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  7151372 agcaaactccaagatcccaagccaaccccaaatgggtt 7151335  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12398602 - 12398639
Alignment:
Q  1 agcaaactctaagatcccaagccaaccccaaatgggtt 38  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  12398602 agcaaactccaagatcccaagccaaccccaaatgggtt 12398639  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19456363 - 19456400
Alignment:
Q  1 agcaaactctaagatcccaagccaaccccaaatgggtt 38  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  19456363 agcaaactccaagatcccaagccaaccccaaatgggtt 19456400  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7392117 - 7392154
Alignment:
Q  1 agcaaactctaagatcccaagccaaccccaaatgggtt 38  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  7392117 agcaaactccaagatcccaagccaaccccaaatgggtt 7392154  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10083973 - 10084010
Alignment:
Q  1 agcaaactctaagatcccaagccaaccccaaatgggtt 38  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  10083973 agcaaactccaagatcccaagccaaccccaaatgggtt 10084010  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10190896 - 10190933
Alignment:
Q  1 agcaaactctaagatcccaagccaaccccaaatgggtt 38  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  10190896 agcaaactccaagatcccaagccaaccccaaatgggtt 10190933  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28968196 - 28968230
Alignment:
Q  1 agcaaactctaagatcccaagccaaccccaaatgg 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  28968196 agcaaactccaagatcccaagccaaccccaaatgg 28968230  T

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