View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18543_high_16 (Length: 220)
Name: NF18543_high_16
Description: NF18543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18543_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 7320684 - 7320514
Alignment:
| Q |
16 |
cactaactagacttgaatgagtgttagatattagtatcgnnnnnnnggtacaaaaatattagtacttttataatatgcatata-nnnnnnnctgtaattt |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
7320684 |
cactaactagacttgaatcagtgttagatattagtatcttttttttggtacaaaaatattagtatttttgtaatatgcatatattttttttctgtaattt |
7320585 |
T |
|
| Q |
115 |
catatatattttaaatttcccct-nnnnnnnntatatattttaaacgtcatgtctatatctaaatttaata |
184 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
7320584 |
catatatattttaaatttcccctcaaaaaaaatatatatgttaaatctcatgtctatatctaaatttaata |
7320514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University