View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18543_high_5 (Length: 439)
Name: NF18543_high_5
Description: NF18543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18543_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 7 - 422
Target Start/End: Original strand, 29120888 - 29121301
Alignment:
| Q |
7 |
tagattatactaacacatttttagttgattagagcgtgttgataaaatgttacttgtttatctagaaaatgccgagtaaactttgtccaagacatagaat |
106 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29120888 |
tagattatactaatacatttttagttgattagagcgtgctgataacatgttacttgtttatctagaaaatgccgagtaaactttgtccaagacatagaat |
29120987 |
T |
|
| Q |
107 |
atgcttatcattactttattagagcaagattagaaaatgaaccagaaccaccaagtcggtgttgtcttttagtcacacacacttattaaaaatggaacac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29120988 |
atgcttatcattactttattagagcaagattagaaaatgaaccagaaccaccaagtcggtgttgtcttttagtcacacacacttattaaaaatggaacac |
29121087 |
T |
|
| Q |
207 |
agaaatttgagaaatatacagnnnnnnnnnnnnncataaacatagaagatggaatcacatacatgtttgactcttgttttctttgtgcttgtaatcttgg |
306 |
Q |
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| T |
29121088 |
agaaatttgagaaatatacag--aaaaaaaaaaacataaacatagaagatggaatcacatacatgtttgactcttgttttctttgtgcttgtaaacttgg |
29121185 |
T |
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| Q |
307 |
ctgttggggtgttaagtactgataattatagcagacatgatttccccgttgactttgtttttgggtcaggcacctctgcttatcaggttctcttttactt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121186 |
ctgttggggtgttaagtactgataattatagcagacatgatttccctgttgactttgtttttgggtcaggcacctctgcttatcaggttctcttttactt |
29121285 |
T |
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| Q |
407 |
taccccaaaaagaagt |
422 |
Q |
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| T |
29121286 |
taccccaaaaagaagt |
29121301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 241 - 422
Target Start/End: Original strand, 39629990 - 39630171
Alignment:
| Q |
241 |
cataaacatagaagatggaatcacatacatgtttgactcttgttttctttgtgcttgtaatcttggctgttggggtgttaagtactgataattatagcag |
340 |
Q |
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| T |
39629990 |
cataaacatagaagatggaaccacatacatgtttgactcttgttttctttgtgcttgtaaacttggctgttggggtgttaagtactgatgattatagcag |
39630089 |
T |
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| Q |
341 |
acatgatttccccgttgactttgtttttgggtcaggcacctctgcttatcaggttctcttttactttaccccaaaaagaagt |
422 |
Q |
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| T |
39630090 |
acatgatttccccgttgactttgtttttgggtcaggcacctctgcttatcaggttcttttttactttaccccaaaaagaagt |
39630171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 120 - 422
Target Start/End: Original strand, 39640516 - 39640822
Alignment:
| Q |
120 |
ctttattagagcaagattagaaaatgaaccagaaccaccaagtcggtgttgtcttttagtcacacacacttattaaaaatggaacacagaaat--ttgag |
217 |
Q |
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|||||| |||||||||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||| | ||||||||||||| ||||| ||||| |
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| T |
39640516 |
ctttatcagagcaagattagaaaatgagtcagaatcaccaattcggtgttgtcttttactcacacacacttctaaaaaatggaacacggaaatgtttgag |
39640615 |
T |
|
| Q |
218 |
aaatatacagnnnnnnnnnnnnn-cataaa-catagaagatggaatcacatacatgtttgactcttgttttctttgtgcttgtaatcttggctgttgggg |
315 |
Q |
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|||||| || |||||| |||||||||||||| || |||||||||||||||||||||||||| ||||| ||| ||||||| |||||| |
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| T |
39640616 |
gaatatagagaaagaaaaaaaaaacataaaacatagaagatggaagcaaatacatgtttgactcttgttttctttttgcttctaaacttggctcttgggg |
39640715 |
T |
|
| Q |
316 |
tgttaagtactgataattatagcagacatgatttccccgttgactttgtttttgggtcaggcacctctgcttatcaggttctcttttactttaccccaaa |
415 |
Q |
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|||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| |
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| T |
39640716 |
tgttgagtactgataattatggcagacatgatttccctgttgactttgtttttgggtcaggtacctctgcatatcaggttctcttttactttacctcaaa |
39640815 |
T |
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| Q |
416 |
aagaagt |
422 |
Q |
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||||||| |
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| T |
39640816 |
aagaagt |
39640822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 39629831 - 39629876
Alignment:
| Q |
56 |
ttacttgtttatctagaaaatgccgagtaaactttgtccaagacat |
101 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
39629831 |
ttacttgtttatctagtaaatgccgagtaaactttgtccaaaacat |
39629876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 39629881 - 39629950
Alignment:
| Q |
134 |
gattagaaaatgaaccagaaccaccaagtcggtgttgtcttttagtcacacacacttattaaaaatggaa |
203 |
Q |
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||||||||||| | |||||||||||| | ||||||||| |||| |||| ||||||| |||||||||||| |
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| T |
39629881 |
gattagaaaataagtcagaaccaccaatttggtgttgtcctttactcacccacacttcttaaaaatggaa |
39629950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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