View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18543_high_6 (Length: 422)
Name: NF18543_high_6
Description: NF18543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18543_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 2591892 - 2592305
Alignment:
| Q |
1 |
tcatgattctgtgagtttgagttctgacacatggaacttgaatcaccatgatcatc---------atcaagttcagacacttcctcctcatccagctgca |
91 |
Q |
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| T |
2591892 |
tcatgattctgtgagtttgagttctgacacatggaacttgaatcaccatgatcatcatcaacatcatcaagttcagacacttcctcctcatccagctgca |
2591991 |
T |
|
| Q |
92 |
atagcttttacaacaattcatgatactagtaattataatcttccaccattgatagagaataatgtggaaaacagcatggtgccaattgatcaagtgcaat |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591992 |
atagcttttacaacaattcatgatactagtaattataatcttccaccattgatagagaataatgtggaaaacagcatggtgccaattgatcaagtgcaat |
2592091 |
T |
|
| Q |
192 |
cttgtaatatggatgaggaaggaggagagttattaacattggagtcattgcaattgcaaagacaagaagagttgaatgaatgggtggaaactcaacaaca |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592092 |
cttgtaatatggatgaggaaggaggagagttattaacattggagtcattgcaattgcaaagacaagaagagttgaatgaatgggtggaaactcaacaaca |
2592191 |
T |
|
| Q |
292 |
atgtcctagctttattttcagctgggagagtgttgaaggacaaattggaggtgaagaacaagtactagtaccaaactcatcacatatgggaacacctaat |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592192 |
atgtcctagctttattttcagctgggagagtgttgaaggacaaattggaggtgaagaacaagtactagtaccaaactcatcacatatgggaacacctaat |
2592291 |
T |
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| Q |
392 |
tcactttctccttt |
405 |
Q |
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|||||||||||||| |
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| T |
2592292 |
tcactttctccttt |
2592305 |
T |
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