View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18543_high_7 (Length: 392)
Name: NF18543_high_7
Description: NF18543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18543_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 3014757 - 3014391
Alignment:
| Q |
11 |
cacagataaacgactaggtcgaagactctgcaataacaagatatgttatgagatctgtgacaaagaaacattgaactataataataactagtggaaaaaa |
110 |
Q |
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| T |
3014757 |
cacagataaacgactaggtcgaagactctgcaataacaagatatgttatgagatctgcgacgaagaaacattgaactataataataactagttgaaaaaa |
3014658 |
T |
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| Q |
111 |
ggctaacctgcacatattcatgattgtaggtaaatttgggaatcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcacc |
210 |
Q |
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| T |
3014657 |
ggctaacctgcacatattcatgattgtaggtaaatttgggaatcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcacc |
3014558 |
T |
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| Q |
211 |
actgaaatatgaaatacaaaaacatgaatagaaagaattaagcagatattacgcaacaacatcgctataatacatacaaatcaacataccttgtagcact |
310 |
Q |
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| T |
3014557 |
gctgaaatatgaaatacaaaaacatgaatagaaagaattaagcagatattacgcgacaacaacgctgtaaaacatacaaatcaacataccttatagcact |
3014458 |
T |
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| Q |
311 |
tgtgggcacaatgctgaatgtttgtcctccgattgtttcgtttttataatacaagtcagtatttagt |
377 |
Q |
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| T |
3014457 |
tgtgggcacaatgctgaatgtttgtcctccgattgtttcgtttttataatacaagtcagtatttagt |
3014391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 183119 - 183042
Alignment:
| Q |
161 |
ttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaa |
238 |
Q |
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| T |
183119 |
ttttgggtccactgaaacaatagaaataacatgtctgggattccttcaccattgaaatatcaaatactaaaacatgaa |
183042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 591250 - 591338
Alignment:
| Q |
152 |
atcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaata |
240 |
Q |
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| T |
591250 |
atcatggtcttttgggtccaaccaaacaatagaaataacatgtccgtgattccttcaccactgaaatatcaaatactagaacatcaata |
591338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 226
Target Start/End: Original strand, 40672025 - 40672172
Alignment:
| Q |
79 |
cattgaactataataataactagtggaaaaaaggctaacctgcacatattcatgattgtaggtaaatttgggaatcatggttttttgagtccacttaaac |
178 |
Q |
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| T |
40672025 |
cattgaataataataataagtggggaaaaaagggctaacctgcacagcttgttgactgtaggtaaacttgtgaataatggtgtattggatccacttaaac |
40672124 |
T |
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| Q |
179 |
aatagaaataacatgtccgggattccttcaccactgaaatatgaaata |
226 |
Q |
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| T |
40672125 |
aatagaaataacatatccgggattccttcaccactgaaatatgaaata |
40672172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 376
Target Start/End: Original strand, 40672231 - 40672304
Alignment:
| Q |
306 |
gcacttgtgggcacaatgctgaatgtttgtcctccg---attgtttcgtttttataatacaagtcagtatttag |
376 |
Q |
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| T |
40672231 |
gcacttgtgggcacaatgctgaatgtttgtcctcctccaatagttatgtttttataatacaaatcagtatttag |
40672304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 44606488 - 44606401
Alignment:
| Q |
153 |
tcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaata |
240 |
Q |
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| T |
44606488 |
tcatggtcttttgggtccacttaactaatagtaataacatatccgggattccttcaccactgaaatattaaatactaaaacatcaata |
44606401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 44627979 - 44627892
Alignment:
| Q |
153 |
tcatggttttttgagtccacttaaacaatagaaataacatgtccgggattccttcaccactgaaatatgaaatacaaaaacatgaata |
240 |
Q |
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| T |
44627979 |
tcatggtcttttgggtccactgaactaatagtaataacatatccgggattccttcaccactgaaatattaaatactaaaacatcaata |
44627892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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